BAC Information

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BAC

Clone NameMSMg01-482F10
Chromosome4 (Build37)
Map Location 41,522,734 - 41,703,175
singlet/doubletdoublet
Overlap geneDnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt
Upstream geneAptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik
Downstream geneIl11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482F10.T7 (MSMg01no482_f10.b1)MSMg01-482F10.TJ (MSMg01no482_f10.g1)
ACCAG562527AG562528
length666735
length of high quality
(start - end)
368 (299 - 666)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no482_f10.b1 PHD_FILE: MSMg01no482_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:13 2005CHROMAT_FILE: MSMg01no482_f10.g1 PHD_FILE: MSMg01no482_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,522,734 - 41,523,101)(41,702,933 - 41,703,175)
sequence
ATCACTTTCAAAACAGGATCCGCGGAATTCATTATGCCCTTTGCAGAGAA
CAACTTCAGAGGTAAAAGCGAGACTGTGAACTAGAAGGTAGTGAAGACCA
TATGGGCAAGGATATATTTTTTTAAAAAGATGAAAGTAAAACTTGAATAT
ATTAAGCCCTGTGGCAAAGGATCCGGATGGAGAGAAGTTGAAGATAAAGG
AGAGAAAAATTGAATTATGACTTGATCCAAGACTCCGAGAAGGTGGGATG
GGATCAGCAGAGACAGAAAGAGGGATGCTTTGAAACAAGGTAGTAATTAG
GGCACATGCCAATGATGATAATTTTGAGGTTTCGTGGCAGGAAGTTGAGA
GGGTTTTCTCTTCTCTTCCCCTAATAGTGTTACGGAATTCCTTCTGGAAG
TGATAACTAGAAAACAAATTTTGCCAATGGCTGTTCCATTTTGTTATGAT
TACAGTCATGCTATTTTCAGAGTTATGGTCTGAGGTTTGTCATGCGCAAT
TATCAGATTACAAAACAGCTGTGAGTGTTTGAGGCCAGAACTCAGTCCCC
CCACCCCCCACCCCCCATTCGCTGTGGAGCCTAGCACATTGTTAGTATTT
GGGACATGCCAGGTACTTGAATAATAATGGCATGGGGCTCTCGGGCTTAT
CATTGGGCTTTGCAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGGGCTATCCAGGCTGCAACAGGGG
CGAGGAAGGCCCCACTCAAAGGCTCAAAATTGCTTGCCCGGAAATGACCC
AAAAGGAGGCGCACTGCTCCCCCTTGTGGGCGAAGGGTAGTAATAAGGAA
GAAGGATTTTTTTCCTATCCCAGTTGGTGGCTGTGTATTCGGGCTTACCT
CCCCATTAGCTCGTGTGGCCCCGGGACACAGAGGGTTGAGTGGGTCGTGG
CGGGGCACTGTCTTTAGAATTTTTTTTTCCACTTGTCCTTGCCAGGGCCG
CTTCATGCGATGAGCCGACACTAACACCCACTCGTCCTGGAGCGGGTTGT
AGCGAATATGCTGGTGCTCTGGGGAGAGTCAAGGATCAGTCAGCAAAACT
CCCTGTCTCTCTCTTCCCCGAGTGGCTCTAATGCCCTAGCAGGCCCAAGT
ACAGGGACGCTCGGTCGGCGCAGTGTTTCTAGAAGCTATAGGCTGGCGGA
GGGGAGTTAAAGGGTTAAACGCTTTCCGTGCCACACGGCCTGCAAGCCCT
TCCTTCCCTCGCCCGCCACCCTGGCCTCGGGTAGGAGTGCCGACCTTGAC
TCTGGGACTATAACTTCCTACGGAAAAGGAAGGCTCGGCTCCGCACAGTA
TCGGGTCCAGGCCGCCCAGCAATTACCGCTCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_f10.b1 MSMg01no482_f10.b1 CHROMAT_FILE:
MSMg01no482_f10.b1 PHD_FILE: MSMg01no482_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:13 2005
         (368 letters)



>mm_chr4_41522534_41523301
          Length = 768

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcacatgccaatgatgataattttgaggtttcgtggcaggaagttgagagggttttc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcacatgccaacgatgataattttgaggtttcgtggcaggaagttgagagggttttc 260

                                                                       
Query: 61  tcttctcttcccctaatagtgttacggaattccttctggaagtgataactagaaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctcttcccctaatagtgttacggaattccttctggaagtgataactagaaaacaaa 320

                                                                       
Query: 121 ttttgccaatggctgttccattttgttatgattacagtcatgctattttcagagttatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgccaatggctgttccattttgttatgattacagtcatgctattttcagagttatgg 380

                                                                       
Query: 181 tctgaggtttgtcatgcgcaattatcagattacaaaacagctgtgagtgtttgaggccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgaggtttgtcatgcgcaattatcagattacaaaacagctgtgagtgtttgaggccag 440

                                                                       
Query: 241 aactcagtccccccaccccccaccccccattcgctgtggagcctagcacattgttagtat 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aactcagtccccccaccccccaccccccattcactgtggagcctagcacattgttagtat 500

                                                                       
Query: 301 ttgggacatgccaggtacttgaataataatggcatggggctctcgggcttatcattgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgggacatgccaggtacttgaataataatggcatggggctctcgggcttatcattgggc 560

                   
Query: 361 tttgcagc 368
           ||||||||
Sbjct: 561 tttgcagc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no482_f10.g1 MSMg01no482_f10.g1 CHROMAT_FILE:
MSMg01no482_f10.g1 PHD_FILE: MSMg01no482_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:14 2005
         (243 letters)



>mm_chr4_41702733_41703375
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctatccaggctgcaacaggggcgaggaaggccccactcaaaggctcaaaattgcttg 60
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 gggctatccaggctgcaacgggggcgaggaaggccccactcaaaggatcaaaattgcttg 384

                                                                       
Query: 61  cccggaaatgacccaaaaggaggcgcactgctcccccttgtgggcgaagggtagtaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cccggaaatgacccaaaaggaggcgcactgctcccccttgtgggcgaagggtagtaataa 324

                                                                       
Query: 121 ggaagaaggatttttttcctatcccagttggtggctgtgtattcgggcttacctccccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggaagaaggatttttttcctatcccagttggtggctgtgtattcgggcttacctccccat 264

                                                                       
Query: 181 tagctcgtgtggccccgggacacagagggttgagtgggtcgtggcggggcactgtcttta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 tagctcgtgtggccccgggacacagagggttgagtgggtcgtggcggggcactgtcttca 204

              
Query: 241 gaa 243
           |||
Sbjct: 203 gaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)