BAC Information

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BAC

Clone NameMSMg01-482H09
Chromosome4 (Build37)
Map Location 42,942,908 - 42,943,478
singlet/doubletsinglet
Overlap geneN28178
Upstream geneLOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635
Downstream geneDnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482H09.T7 (MSMg01no482_h09.b1)MSMg01-482H09.TJ (MSMg01no482_h09.g1)
ACCAG562621AG562622
length729673
length of high quality
(start - end)
574 (45 - 618)244 (58 - 301)
definitionCHROMAT_FILE: MSMg01no482_h09.b1 PHD_FILE: MSMg01no482_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:22 2005CHROMAT_FILE: MSMg01no482_h09.g1 PHD_FILE: MSMg01no482_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGTTACATCTTTTCAAAAAACCTTTGCCACTGTGACCCTGTAAA
ACAGTTATGGATAGACAGTAAACATCCATTAGTATTATATCAGGGTTTTT
TTATTCTTTTGAGTTGTATCTTAAATTATATTAACTAACAAATGAAAGAG
GCAGGTCTTCTAAGTTGACCGATTAAAGAATATAGGTCTCTGTCAGGTGT
GATGGCGCACACCTTTAATCTCAGCACTCAGGAGGCAGAGGCAGGAGGAT
TTCTGTCAATCTGATGTTTATATGGCACATAGTGAGTTCCAGGAGAGTCA
AGGCTACATAGTGAGACCCCATCTTTTAAAAAATGGGAATATGAGTTTTC
TTGGTAACAGTAAGGTCCAGGCTAGAGATGTGTATCACTGAGGTGCATAC
AAATAATAAATATTTTAGAAAGAATATATGGCTATTTCCAGGCATGGCAT
AGTAAGGTTTTATTTGGAAAAGCAAGTTCTTGACCTGAAAAGATTTGATT
TGAGTTTCTGACACCTCCCCCCACCCCGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTCCCNNCCCCTCTTTCCCTCCCTTCCCTTTTT
CCTCTTTTTTTTTTTTCCTCTCTTTTCTTCCCCCCCTCCCCCCTTCTCTT
TTCTCCTCCCCCCCTCTTCTCCCCTCTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCG
AAAAATTCTCTGAGAGGAGAACTAAGTACAAATCAAAGGGAGTAACCTAA
CCCTGAAAACTCAGATCTGAAGCCCTCCATGTTTATACTAACTAGACTGA
CTATGCAGTCCAGACTGTCTTAAAATTCACCATGCTGACCTTGAACTCAA
GACTCCTGCTTCAGTCTACTTAGTAGTAGTACAAGTGTGTACAACCACAC
GTGGCCTGAGGGTTTGCTTCTTGTATTAAGAAAAACATTTCATAAAAGCT
TTTTTTTAAAAACAAAAAACAAAAAACAAAAAAACAAAGCTATCGTGTTA
ACTCACTAAAATGCCAAATACTGCTTAAAACAATTACCTACTGTTAGACA
ATGTGAGAAAATGGGAACTGCCACATTTGCCTATCATTTCAAAGGCATGT
GGTTTTATCCAGATGAGAAGACTGAGACAGGAAGAGCTCACATTTCAGGC
CAGCCTAAGCTACAAAGCAAGACTATCTTACAAGCAAAACACCCATACAC
ATAAATCTTAAAAAGAGAGATAGAATTAAGTGATACCAAATTAAATGTGC
AATTAAAACTGAAGCTATGTGTTGTAGAAACAAAGAAATGGGGAGATGGC
TCGGTGGATAAAATGTTTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_h09.b1 MSMg01no482_h09.b1 CHROMAT_FILE:
MSMg01no482_h09.b1 PHD_FILE: MSMg01no482_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:22 2005
         (574 letters)



>mm_chr4_42942705_42943678
          Length = 974

 Score = 1058 bits (547), Expect = 0.0
 Identities = 565/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagttacatcttttcaaaaaacctttgccactgtgaccctgtaaaacagtta 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctagctagatcttttcaaaaaacctttgccactgtgaccctgtaaaacagtta 263

                                                                       
Query: 64  tggatagacagtaaacatccattagtattatatcagggtttttttattcttttgagttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggatagacagtaaacatccattagtattatatcagggtttttttattcttttgagttgt 323

                                                                       
Query: 124 atcttaaattatattaactaacaaatgaaagaggcaggtcttctaagttgaccgattaaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 atcttaaattatattaactaacaaatgaaagaggcaggtcttctaagttgactgattaaa 383

                                                                       
Query: 184 gaatataggtctctgtcaggtgtgatggcgcacacctttaatctcagcactcaggaggca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatataggtctctgtcaggtgtgatggcgcacacctttaatctcagcactcaggaggca 443

                                                                       
Query: 244 gaggcaggaggatttctgtcaatctgatgtttatatggcacatagtgagttccaggagag 303
           ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct: 444 gaggcaggaggatttctgtcaatctgaggtcaatatggcacatagtgagttccaggagag 503

                                                                       
Query: 304 tcaaggctacatagtgagaccccatcttttaaaaaatgggaatatgagttttcttggtaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaaggctacatagtgagaccccatcttttaaaaaatgggaatatgagttttcttggtaa 563

                                                                       
Query: 364 cagtaaggtccaggctagagatgtgtatcactgaggtgcatacaaataataaatatttta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagtaaggtccaggctagagatgtgtatcactgaggtgcatacaaataataaatatttta 623

                                                                       
Query: 424 gaaagaatatatggctatttccaggcatggcatagtaaggttttatttggaaaagcaagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaagaatatatggctatttccaggcatggcatagtaaggttttatttggaaaagcaagt 683

                                                                       
Query: 484 tcttgacctgaaaagatttgatttgagtttctgacacctccccccaccccgtgtgtgtgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcttgacctgaaaagatttgatttgagtttctgacacctccccccaccccgtgtgtgtgt 743

                                          
Query: 544 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 574
           |||||||||||||||||||||||||||||||
Sbjct: 744 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)