XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
AGGTTTCCAATGTCTTTGACATGAAACCTAAGGGTTTAGTCTCCATTACT
TTAGGATCATTCCTGTCATCTAAAGCTTATGATGTTCCTGATATGGACCC
TTTTCTCATTTGCCTGGAAGAACTGTTCATTGTTTGATTAAGAATCACAT
TTCTCCTTTCTCACAAGAGTTACCTTGGAAGAAAAAGCCAATAATGCACA
CATTTCTTTCCACCTGCTTGTTTTTTTGTTGATAGATCTTAGTTTAAATT
GAAGAGCTGAATTCAAGGTGAAATATTTTGTCCATGGATACAGTAGATGA
GCTCCTCCTTGCTTTGTTCCTTAACAACAGGTGGGAATATATTTCAATAG
GACTGAAAGTATTGACATAAGTTTACTGATGAGAATTTCTCAACTTATGT
TAATTTGGACTTCTATGTGTTTGCGATAGTTGTCTTGCCTGGAAGACAAT
AATGCAAAACTAGTCATGACCCTTTCCAAAAGGAAGAGATATACCAGAAA
TTATTTGGTGTACATCATACAGTAGGGAATCTAATCTCTAAATGTGGGTG
GGAGTCATTTCTCAGTGTTTAATGTACTTATCATGAAGTGACCAGAACAT
AACAGCAGGAAGAAGGCCAAATCACAAGGAAATAATTTCAATGTTGTTTT
CTTACAGATCAGCCTGAAGGGGAAAATAGN

CTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTTTGTTCCCCATTTTTT
AATAGGATTATTTGATTCTCTGGAGTCTAACTTCTTGTGTTCTTTGTATA
TATTGGATATAAGCCCTCTACCAGATGTAGAGTTGGTAAAGATCTTTTCC
CAATCTGTTGGTTGCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACA
AAAGCTTTGCAATTTTATCAGGTCCCATTTGTCAGTTCTTGATCTTAGAG
CATAGGCTATTGGTGTTCTGTTCAGGAAAAATTTCCCTGTGCCCATGTGC
TCAAAGCTCTTCCCTGTTTTTTTTTTTTTTCTATTAGTTTCAGTGTATCT
GATTTTATATGGACACCCTTGGTCCATTTGGACTTGAGCTTTGTACAAGG
AGATAAGAATGGATCAATTTGCATTCTTGTACCTGCTGACCACCAGTTGA
ACCAGCACCATTTCCTGAAAATCTTGTCTTTTTTCCACTGTAAGGTTTTA
GCTCCAATGTCAAAGATCAAGTGTCCATAGGTATGTGGGTTCATTTCTGG
ATCTTCAATTTTATTCCAATTATCTGCCTACCATTCACTGTACCATTAAC
ATGCATTTTTTTTTTTATCACCATTGCTCTGTAGCAGAGCTTGAGGTCAG
GGATGGTGATTACCCCAGAATTTCTTTTATTGTTGAGAATAGTTTTCTCT
AN

Query= MSMg01no482_m13.b1 MSMg01no482_m13.b1 CHROMAT_FILE:
MSMg01no482_m13.b1 PHD_FILE: MSMg01no482_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:46 2005
         (605 letters)



>mm_chr4_77087389_77088397
          Length = 1009

 Score = 1135 bits (587), Expect = 0.0
 Identities = 602/609 (98%), Gaps = 4/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgacatgaaacctaagggtttagtctccattactttaggatcattcctgtcatctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgacatgaaacctaagggtttagtctccattactttaggatcattcctgtcatctaaa 260

                                                                       
Query: 61  gcttatgatgttcctgatatggacccttttctcatttgcctggaagaactgttcattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttatgatgttcctgatatggacccttttctcatttgcctggaagaactgttcattgtt 320

                                                                       
Query: 121 tgattaagaatcacatttctcctttctcacaagagttaccttggaagaaaaagccaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattaagaatcacatttctcctttctcacaagagttaccttggaagaaaaagccaataa 380

                                                                       
Query: 181 tgcacacatttctttccacctgcttg----tttttttgttgatagatcttagtttaaatt 236
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 381 tgcacacatttctttccacctgcttgtttttttttttgttgatagatcttagtttaaatt 440

                                                                       
Query: 237 gaagagctgaattcaaggtgaaatattttgtccatggatacagtagatgagctcctcctt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagagctgaattcaaggtgaaatattttgtccatggatacagtagatgagctcctcctt 500

                                                                       
Query: 297 gctttgttccttaacaacaggtgggaatatatttcaataggactgaaagtattgacataa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctttgttccttaacaacaggtgggaatatatttcaataggactgaaagtattgacataa 560

                                                                       
Query: 357 gtttactgatgagaatttctcaacttatgttaatttggacttctatgtgtttgcgatagt 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 gtttactgatgagaatttctcaacttatgttaatttggacttctatgtgtttgcaatagt 620

                                                                       
Query: 417 tgtcttgcctggaagacaataatgcaaaactagtcatgaccctttccaaaaggaagagat 476
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 621 tgtcttgcctggaagacaataatgcaaaaccagtcatgaccctttctaaaaggaagagat 680

                                                                       
Query: 477 ataccagaaattatttggtgtacatcatacagtagggaatctaatctctaaatgtgggtg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataccagaaattatttggtgtacatcatacagtagggaatctaatctctaaatgtgggtg 740

                                                                       
Query: 537 ggagtcatttctcagtgtttaatgtacttatcatgaagtgaccagaacataacagcagga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagtcatttctcagtgtttaatgtacttatcatgaagtgaccagaacataacagcagga 800

                    
Query: 597 agaaggcca 605
           |||||||||
Sbjct: 801 agaaggcca 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1009
Length adjustment: 10
Effective length of query: 595
Effective length of database: 999
Effective search space:   594405
Effective search space used:   594405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)