Query= MSMg01no483_a20.b1 MSMg01no483_a20.b1 CHROMAT_FILE:
MSMg01no483_a20.b1 PHD_FILE: MSMg01no483_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:07 2005
(607 letters)
>mm_chr4_128081308_128082314
Length = 1007
Score = 1065 bits (551), Expect = 0.0
Identities = 596/619 (96%), Gaps = 18/619 (2%)
Strand = Plus / Minus
Query: 5 gaattcattctgtcatgttaatcaagtcactaagcccttgcttatctttcaagtgggtaa 64
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 976 gaattcattctgtcatgttaatcaagtcactaagcccttgtttatctttcaagtgggtaa 917
Query: 65 catatcagagactcacagaggtatatttaagtttttcacagaaattcctgcagtgaatgc 124
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 916 catatcagagactcacagaggtatattcaagtttttcacagaaattgctgcagtgaat-t 858
Query: 125 a-----------atatatatatgtgtgtgtgtgt---t-tgtgtgtgtgtaacatttcta 169
| |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 857 atatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacatttcta 798
Query: 170 gtagtcatgttatttggcacatcaaattttattgtagattgattgaacatttcattaata 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtagtcatgttatttggcacatcaaattttattgtagattgattgaacatttcattaata 738
Query: 230 caaaagaatccccttcttcatttcctttgagatgtggagacg-tcctcatgagcgtcctg 288
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 737 caaaagaatccccttcttcatttcctttgagatgtggagacgttcc-catgagcgtcctg 679
Query: 289 taatgagctgatttcatttttcagtgttaccaccccccttcattgtctctgttcggtgtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 taatgagctgatttcatttttcagtgttaccaccccccttcattgtctctgttcggtgtt 619
Query: 349 ttaattggatgatcatgtttttcatctccattcaatctttcctcatctgagaaagctctg 408
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 618 ttaattggatgatcatgtttttcatctccatgcaatctttcctcatctgagaaagctctg 559
Query: 409 ttttcattattgcctattttgtgccataaatacaatattctctcaactcctgtgaagaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttcattattgcctattttgtgccataaatacaatattctctcaactcctgtgaagaat 499
Query: 469 accaattaggagcttttaaagtatgtttctgttctttgtggcaaactgaggggcaattag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 accaattaggagcttttaaagtatgtttctgttctttgtggcaaactgaggggcaattag 439
Query: 529 ctctgatccctcagacaggtcccctactcatctgctgaatattcacacatacttggttaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctctgatccctcagacaggtcccctactcatctgctgaatattcacacatacttggttaa 379
Query: 589 tttccttgttggcacatca 607
|||||||||||||||||||
Sbjct: 378 tttccttgttggcacatca 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_a20.g1 MSMg01no483_a20.g1 CHROMAT_FILE:
MSMg01no483_a20.g1 PHD_FILE: MSMg01no483_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:07 2005
(524 letters)
>mm_chr4_127912726_127913649
Length = 924
Score = 886 bits (458), Expect = 0.0
Identities = 508/530 (95%), Gaps = 11/530 (2%)
Strand = Plus / Plus
Query: 5 caagcttgcgcaacaagcgctttgcctgctacaccttccc-cagcatcctggtctgcttt 63
|||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |||
Sbjct: 205 caagcttgcgcaacaagcactttgcctgctacacc-tccctcagcatcctggtctgtttt 263
Query: 64 ttgtgtctccatcatggtcttgctgtagttttatggtgacctctgctctccagggaaaag 123
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 ttgtgtctccatcacggtcttgctgtagttttatggtgacctctgctctccggggaaaag 323
Query: 124 ggacctccctctttcatattgggaaaacactccactggggacccatatgcacttgtgtct 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacctccctctttcttattgggaaaacactccactggggacccatatgcacttgtgtct 383
Query: 184 tgttgaaattcagagtaagtttttcagctttcccaccagataagggatgtgtagaaggct 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 tgttgaaattcagagtaagtttttcagctttcccgccagataagggatgtgtagaaggct 443
Query: 244 ctagaaagaactgccatgtttttgatagtgagccttcctccccagaaccgtggggctccc 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 ctagaaagaactgccatgtttttgatagtgagtcttcctccccagaaccgtggggctccc 503
Query: 304 ctcacttttcgggtatttttcatgatctttttttgggggggtggtagttcgagacagggt 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 ctcacttttcgggtatttttcatgatctttttttgggggggtagtagttcgagacagggt 563
Query: 364 ttctctgtgtagccctggctgtcctggaactcac---------caggctggcctcgaact 414
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 ttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcgaact 623
Query: 415 cagaaatccgcctgcctctgcctcctgagtgctgggattaaagacgtgcgccaccatgcc 474
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 cagaaatctgactgcctctgcctcctgagtgctgggattaaagacatgcgccaccatgcc 683
Query: 475 tggctacttttcatgatctttaacaaagcatttatagttttcatcatgta 524
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggctacttttcatgatctttaacaaagcatttatagttttcatcatgta 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
