BAC Information

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BAC

Clone NameMSMg01-483B12
Chromosome4 (Build37)
Map Location 138,871,575 - 139,038,362
singlet/doubletdoublet
Overlap geneAkr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
Upstream genePink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808
Downstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483B12.T7 (MSMg01no483_b12.b1)MSMg01-483B12.TJ (MSMg01no483_b12.g1)
ACCAG563103AG563104
length735739
length of high quality
(start - end)		641 (51 - 691)581 (83 - 663)
definitionCHROMAT_FILE: MSMg01no483_b12.b1 PHD_FILE: MSMg01no483_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:10 2005CHROMAT_FILE: MSMg01no483_b12.g1 PHD_FILE: MSMg01no483_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,037,730 - 139,038,362)(138,871,575 - 138,872,155)
sequence
CCTTCTCCTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGA
GGATCCGCGGAATTCTAATTCCAGCAAGAAAGGGGCCGAGCTAACCAGGC
AAACACTAGACTGAGGCCCCAGCGTAGCTCTAGAATCTGTCATAAGCCCT
ACTCCTCTCTCATGACAAAGTCTTGCCAGTGGCCAGGAAGCTCCAGCAGT
GTCCCTATAACCTTCTGGAGAAGGTCATCTATGTGGAGAAGACAAAACAA
TACCAAGAAACCCAGTGTCCAGACTGCAGGGCCATAGTCACGGCTACAAA
GATACAGGAGGCTGGTGCAAATACCTTGCTTTGCTTTTTTTTTTTTTTTT
TGCTCCTGTAAAATGGGCTTGCCCAGACCCAGCCAGAGCCTAACTCTAGC
TCCATCCCTGTGGGAGCCCCACGCTTCTAGCCATGGCAGGCTCTGCTCAG
GCAAGGGTTTGCTCACTCGTGCAGCAAACTTGCCTTTGTGAATGAATGTC
CCATCAGAGGTCCAACTGCCGTATCACCAAGCTCATGCCACTGCCCACTG
GCTAGCAGAGGAAATAGCCTGTGGCTGAGGTGGCTTCGGGGTTAGCCCTG
CCTGGTCAACTACAACAGAGCTGACAATTGAAGTCCCCAGTTCTGTTGGG
CAGGGTCAATCCTGGGAAGTGTTTTCCTCACCGGGTCTCTGCCTGAGCAG
TCCATTCTAGGTCATGGCTGCCAAGAGACATGTCN

TCCTCTCCCCGATTCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATCCAGCCCGTAGAG
GAGGCCTGGGGAAAGCTGTAGACTGATGCTGATCCTGGCCAGCTTCTGCT
CCCTGCACCCGACACCCTCTCCCTGCCAGAGATCTTAGACATAACTGAAC
CTGGGATGGGGTCAGTATAGAGATTTCAAAATACAAGACTGCAAAGCCAG
GCCTGTGTCACACACCTGTGATCCAGCACTTTGGAAGGCTGAGGCAGGAA
GCTCACTAAGTTAAAGGCAAATATGGGCTACAGAGCAAGACTGTTTCAAA
ACAACAACAACAAAAACCCCACCAGACTTAATAGATAAAATATGCATGCT
GTATAGCCACGAGGACCTGAATTCTCACCTCCGAATTTACACACAGAGCC
AGGTGTGACTGTGCCCCTAGTACCCAGTTCTGAGGAAGGCAAGAGACGGG
ATCACCCAGCTCCAGATTCAGTGAGAGACCCTGTCTCAAGGGAATAAGGC
AGAAAGCAAGAGAGTAGGACTTTCCACATCCTCCTCTGACCTCGGCACCC
ATACACATGCACAGCACGTACCTACAGACACACAAATATAAATACAATTT
AAAGAGTGGAGGACAGGCGCTGGAGAGATTTCTCATTGTTTAATAGTACT
GGTTGCTTTTCTTAAGGCCTTCAGTTTTATTTTTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_b12.b1 MSMg01no483_b12.b1 CHROMAT_FILE:
MSMg01no483_b12.b1 PHD_FILE: MSMg01no483_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:10 2005
         (641 letters)



>mm_chr4_139037522_139038562
          Length = 1041

 Score = 1193 bits (617), Expect = 0.0
 Identities = 629/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   ggaattctaattccagcaagaaaggggccgagctaaccaggcaaacactagactgaggcc 68
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggaattctaatggcagcaagaaaggggccgagctaaccaggcaaacactagactgaggcc 782

                                                                       
Query: 69  ccagcgtagctctagaatctgtcataagccctactcctctctcatgacaaagtcttgcca 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccagcgtagctctagaatctgtcataagccctactcctctctcatgacaaagtcttgcca 722

                                                                       
Query: 129 gtggccaggaagctccagcagtgtccctataaccttctggagaaggtcatctatgtggag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtggccaggaagctccagcagtgtccctataaccttctggagaaggtcatctatgtggag 662

                                                                       
Query: 189 aagacaaaacaataccaagaaacccagtgtccagactgcagggccatagtcacggctaca 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagacaaaacaataccaagaaacccagtgtccagactgcagggccatagtcacggctaca 602

                                                                       
Query: 249 aagatacaggaggctggtgcaaataccttgctttgctttttttttttttttttgctcctg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagatacaggaggctggtgcaaataccttgctttgctttttttttttttttttgctcctg 542

                                                                       
Query: 309 taaaatgggcttgcccagacccagccagagcctaactctagctccatccctgtgggagcc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taaaatgggcttgcccagacccagccagagcctaactctagctccatccctgtgggagcc 482

                                                                       
Query: 369 ccacgcttctagccatggcaggctctgctcaggcaagggtttgctcactcgtgcagcaaa 428
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcaggcttctagccatggcaggctctgctcaggcaagggtttgctcactcgtgcagcaaa 422

                                                                       
Query: 429 cttgcctttgtgaatgaatgtcccatcagaggtccaactgccgtatcaccaagctcatgc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttgcctttgtgaatgaatgtcccatcagaggtccaactgccgtatcaccaagctcatgc 362

                                                                       
Query: 489 cactgcccactggctagcagaggaaatagcctgtggctgaggtggcttcggggttagccc 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactgcccactggctagcagaggaaatagcctgtggctgaggtggcttcggggttagccc 302

                                                                       
Query: 549 tgcctggtcaactacaacagagctgacaattgaagtccccagttctgttgggcagggtca 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgcctggtcaactacaacagagctgacaattgaagtccccagttctgttgggcagggtca 242

                                            
Query: 609 atcctgggaagtgttttcctcaccgggtctctg 641
           |||||||||||||||||||||||||||||||||
Sbjct: 241 atcctgggaagtgttttcctcaccgggtctctg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_b12.g1 MSMg01no483_b12.g1 CHROMAT_FILE:
MSMg01no483_b12.g1 PHD_FILE: MSMg01no483_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:10 2005
         (581 letters)



>mm_chr4_138871375_138872355
          Length = 981

 Score = 1123 bits (581), Expect = 0.0
 Identities = 581/581 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatccagcccgtagaggaggcctggggaaagctgtagactgatgctgatcctggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatccagcccgtagaggaggcctggggaaagctgtagactgatgctgatcctggccag 260

                                                                       
Query: 61  cttctgctccctgcacccgacaccctctccctgccagagatcttagacataactgaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgctccctgcacccgacaccctctccctgccagagatcttagacataactgaacct 320

                                                                       
Query: 121 gggatggggtcagtatagagatttcaaaatacaagactgcaaagccaggcctgtgtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatggggtcagtatagagatttcaaaatacaagactgcaaagccaggcctgtgtcaca 380

                                                                       
Query: 181 cacctgtgatccagcactttggaaggctgaggcaggaagctcactaagttaaaggcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctgtgatccagcactttggaaggctgaggcaggaagctcactaagttaaaggcaaat 440

                                                                       
Query: 241 atgggctacagagcaagactgtttcaaaacaacaacaacaaaaaccccaccagacttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggctacagagcaagactgtttcaaaacaacaacaacaaaaaccccaccagacttaat 500

                                                                       
Query: 301 agataaaatatgcatgctgtatagccacgaggacctgaattctcacctccgaatttacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agataaaatatgcatgctgtatagccacgaggacctgaattctcacctccgaatttacac 560

                                                                       
Query: 361 acagagccaggtgtgactgtgcccctagtacccagttctgaggaaggcaagagacgggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagagccaggtgtgactgtgcccctagtacccagttctgaggaaggcaagagacgggat 620

                                                                       
Query: 421 cacccagctccagattcagtgagagaccctgtctcaagggaataaggcagaaagcaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacccagctccagattcagtgagagaccctgtctcaagggaataaggcagaaagcaagag 680

                                                                       
Query: 481 agtaggactttccacatcctcctctgacctcggcacccatacacatgcacagcacgtacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtaggactttccacatcctcctctgacctcggcacccatacacatgcacagcacgtacc 740

                                                    
Query: 541 tacagacacacaaatataaatacaatttaaagagtggagga 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacagacacacaaatataaatacaatttaaagagtggagga 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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