BAC Information

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BAC

Clone NameMSMg01-483G14
Chromosome4 (Build37)
Map Location 28,536,063 - 28,536,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483G14.T7 (MSMg01no483_g14.b1)MSMg01-483G14.TJ (MSMg01no483_g14.g1)
ACCAG563346AG563347
length782773
length of high quality
(start - end)		537 (51 - 587)592 (80 - 671)
definitionCHROMAT_FILE: MSMg01no483_g14.b1 PHD_FILE: MSMg01no483_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:36 2005CHROMAT_FILE: MSMg01no483_g14.g1 PHD_FILE: MSMg01no483_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACAATACACACAACAGATGGAAAAAGAGCCAAAAGAGTG
CCACAGGATTCAGAGATTCACTTGTTCACACACTCAAGAATCCCATAAAA
ACGCCAATTTGGACACCATATGCAGAGAACCTACTACAGACTCAGGCAGG
CCCTATGCATACAGCCTCAATCTGTGTAACTTCAAAGGAGTTTTGATCAT
GTTGATATACAGGGCCTTGTTCTCCTGGTGTCCCTCATGTCCTCTAACCA
TTTTGCTTTTCAGCCCCCTCTTCCCAGGTGTTCTCTGTGCCCTGAGAGGA
CAGGTTTGATGCTGATATACTACATAGGGTTTCACGATGTCTGTACTCTC
TGCATAGAGTCTGGCTGTGGGTCTCTGTGTTCTCATCTGCTACATTGATC
TATGAACATAGAATATCATGAGGAGTCCTTTTATTGCTACAATTATATTT
TTAATTTTATTTAATCTACATTTTTTTTTTAGAACAGTCTGTGTTTCTTG
ACCAGACAGGCAGGATGCCATTGTGGAACAAAATGTTTGTGTCTGGGTTA
TTCTTTATTTTTCTCCTCTGGTGGCATGAAGAGTATCATCCTGAACCAAG
GAGGCTTGCACATAGCAGTGAAGGCTCTATATAAGCATATGTTCAACATC
TCTTTGTGNCATGAGTTGTATAGGTGTTTTCTTCAGCAGTGTGGCCTTGC
CTTCAGTGTGTAGAGAGCAAATCTGAGAGCTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAGCAGGCACCCACATA
AAATTACTAGGATTATAATAAAATAACTTAACACATGTGTTTTTGTATGC
TGTATATGAAGAAATTATGTAGCTGTAAATCAGACTAAAAAAGAAAGAAA
CATATCTGTGAAGATGATTTATTAAAAACTATTCATTTGTGATCATGAAC
TCAAATGCTGTGAGCCTTCTATCAGGGAAGGAAATGTGGAATATAAATGG
TGAACTCATTACCTGTGAACATGCAACCTAAGACTTTCAGAGTCCTTGAA
TGTTGCGCGCGCCCAACTGGCCAGGAAGAACGACGCTGCAACAGGATCCT
TCTGCACACGTTTATTCAGTCCTGTTTCTTCTTTCTCTATATCTCCCTGT
TTATATCTCCCTTGTTTATATCTCCCTCGAATCCTGGGCCTCTCACCCTT
TTATACTCTCAGTTCCCATCCACGCACAGCAGGCCACGCCACCTTACCAG
GCACGCAGCTTCAGCTAATCAGGGCAGCAGGGGCATATCTTCATCAAAAT
GGATTCACTGGTATCCTGGTACACCTGCACAGCTCTCAAGATGTTTGTGG
CTTATATTCAGGTGTATGAGGAAGTCAGGTGCAAGCCATAAGACTTAGTT
GCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCTGCTCCTCACACTTG
AATACACTTTGTCAATGATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_g14.g1 MSMg01no483_g14.g1 CHROMAT_FILE:
MSMg01no483_g14.g1 PHD_FILE: MSMg01no483_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:36 2005
         (592 letters)



>mm_chr4_28536063_28537054
          Length = 992

 Score =  872 bits (451), Expect = 0.0
 Identities = 466/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaagcaggcacccacataaaattactaggattataataaaataacttaacacatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cttaaagcaggcacccacataaaattactaggattataataaaataacttaacacatgtg 412

                                                                       
Query: 61  tttttgtatgctgtatatgaagaaattatgtagctgtaaatcagactaaaaaagaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tttttgtatgctgtatatgaagaaattatgtagctgtaaatcagactaaaaaagaaagaa 352

                                                                       
Query: 121 acatatctgtgaagatgatttattaaaaactattcatttgtgatcatgaactcaaatgct 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 351 acatatctgtgaagatgatttattaaaaactattcttttgtgatcatgaactcaaatgct 292

                                                                       
Query: 181 gtgagccttctatcagggaaggaaatgtggaatataaatggtgaactcattacctgtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtgagccttctatcagggaaggaaatgtggaatataaatggtgaactcattacctgtgaa 232

                                                                       
Query: 241 catgcaacctaagactttcagagtccttgaatgttgcgcgcgcccaactggccaggaaga 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 231 catgcaacctaagactttcagagtccttgaatgttgcgcgcacccaactggccaggaaga 172

                                                                       
Query: 301 acgacgctgcaacaggatccttctgcacacgtttattcagtcctgtttcttctttctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acgacgctgcaacaggatccttctgcacacgtttattcagtcctgtttcttctttctcta 112

                                                                       
Query: 361 tatctccctgtttatatctcccttgtttatatctccctcgaatcctgggcctctcaccct 420
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 111 tatctccctgtttatatctcccttgtttatatctccctcgaaccctgggtctctcaccct 52

                                                              
Query: 421 tttatactctcagttcccatccacgcacagcaggccacgccaccttaccag 471
           ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 51  tttatactctcagttcccatccacgcacagcaggccacgccacctcaccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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