MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-483I16
Chromosome	4 (Build37)
Map Location	98,022,348 - 98,022,831
singlet/doublet	singlet
Overlap gene	Tm2d1
Upstream gene	LOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik
Downstream gene	Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC620883 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 241 ESTs, 11 Proteins pseudo : _no_value

name	EG638698 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:638698 MGI:3643458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Nfia (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18027 MGI:108056
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039459 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins pseudo : _no_value

name	LOC669426 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669426
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC384106 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384106
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 41 Proteins pseudo : _no_value

name	0610025J13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78687 MGI:1915618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Tm2d1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94043 MGI:2137022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Inadl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	L1td1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381591 MGI:3578435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242553 MGI:3043381
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039541 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039541
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Usp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230484 MGI:2385198
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dock7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67299 MGI:1914549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Angptl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30924 MGI:1353627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665193 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs

name	Atg4c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242557 MGI:2651854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfia (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378539 GeneID:18027 MGI:108056
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor I/A transcript_id : NM_010905.2

name	0610025J13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372137 GeneID:78687 MGI:1915618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610025J13 gene transcript_id : XM_355548.4

name	Tm2d1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60097933 GeneID:94043 MGI:2137022
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TM2 domain containing 1 transcript_id : NM_053157.2

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769577 GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_172696.2

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769580 GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_001005784.1

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769579 GeneID:12695 MGI:1277960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_007704.2

name	Inadl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55769575 GeneID:12695 MGI:1277960
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : InaD-like (Drosophila) transcript_id : NM_001005787.1

name	L1td1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487094 GeneID:381591 MGI:3578435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LINE-1 type transposase domain containing 1 transcript_id : NM_001081202.1

name	Ankrd38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254256 GeneID:242553 MGI:3043381
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 38 transcript_id : NM_172872.2

name	Usp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801746 GeneID:230484 MGI:2385198
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptdiase 1 transcript_id : NM_146144.3

name	Dock7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835727 GeneID:67299 MGI:1914549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dedicator of cytokinesis 7 transcript_id : NM_026082.4

name	Angptl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388354 GeneID:30924 MGI:1353627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiopoietin-like 3 transcript_id : NM_013913.3

name	LOC665193 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372140 GeneID:665193
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs product : hypothetical LOC665193 transcript_id : XM_975196.1

name	Atg4c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254278 GeneID:242557 MGI:2651854
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 4C (yeast) transcript_id : NM_175029.2

name	Nfia (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754836 CCDS:CCDS18373.1 GeneID:18027 MGI:108056
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear factor I/A protein_id : NP_035035.1

name	0610025J13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372138 GeneID:78687 MGI:1915618
definition	codon_start : 1 product : hypothetical protein LOC78687 protein_id : XP_355548.4

name	Tm2d1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32171188 CCDS:CCDS18374.1 GeneID:94043 MGI:2137022
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA] GO_function : GO:0001540 - beta-amyloid binding [Evidence IPI]; GO:0004930 - G-protein coupled receptor activity [Evidence IDA] GO_process : GO:0008624 - induction of apoptosis by extracellular signals [Evidence IDA] codon_start : 1 note : beta-amyloid binding protein product : beta-amyloid binding protein precursor protein_id : NP_444387.1

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55769578 CCDS:CCDS18375.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 1 protein_id : NP_766284.2

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55769581 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 2 protein_id : NP_001005784.1

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671754 CCDS:CCDS18376.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 3 protein_id : NP_031730.1

name	Inadl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55769576 CCDS:CCDS18377.1 GeneID:12695 MGI:1277960
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; InaD-like protein; PALS1-associated tight junction protein; inactivation no after-potential D-like protein; channel-interacting PDZ domain protein; novel ankyrin-repeat protein product : InaD-like protein isoform 4 protein_id : NP_001005787.1

name	L1td1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487095 GeneID:381591 MGI:3578435
definition	codon_start : 1 product : LINE-1 type transposase domain containing 1 protein_id : NP_001074671.1

name	Ankrd38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254257 CCDS:CCDS18379.1 GeneID:242553 MGI:3043381
definition	codon_start : 1 product : ankyrin repeat domain 38 protein_id : NP_766460.2

name	Usp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981898 CCDS:CCDS18381.1 GeneID:230484 MGI:2385198
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 1 protein_id : NP_666256.2

name	Dock7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191789 GeneID:67299 MGI:1914549
definition	GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0051020 - GTPase binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA] codon_start : 1 note : dedicator of cytokinesis protein 7 product : dedicator of cytokinesis 7 protein_id : NP_080358.3

name	Angptl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469117 GeneID:30924 MGI:1353627
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0004857 - enzyme inhibitor activity [Evidence IDA]; GO:0005178 - integrin binding [Evidence ISS] GO_process : GO:0007160 - cell-matrix adhesion [Evidence ISS]; GO:0007229 - integrin-mediated signaling pathway [Evidence ISS]; GO:0016042 - lipid catabolism [Evidence ISS]; GO:0045766 - positive regulation of angiogenesis [Evidence ISS]; GO:0030335 - positive regulation of cell migration [Evidence ISS]; GO:0045834 - positive regulation of lipid metabolism [Evidence NAS]; GO:0006641 - triacylglycerol metabolism [Evidence NAS] codon_start : 1 note : hypolipidemia product : angiopoietin-like 3 protein_id : NP_038941.1

name	LOC665193 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372141 GeneID:665193
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980290.1

name	Atg4c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254279 CCDS:CCDS18382.1 GeneID:242557 MGI:2651854
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005829 - cytosol [Evidence ISS]; GO:0005875 - microtubule associated complex [Evidence ISS] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence ISS]; GO:0008234 - cysteine-type peptidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008017 - microtubule binding [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0000045 - autophagic vacuole formation [Evidence ISS]; GO:0006914 - autophagy [Evidence ISS]; GO:0006612 - protein targeting to membrane [Evidence ISS]; GO:0006623 - protein targeting to vacuole [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006508 - proteolysis [Evidence ISS]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cysteine protease involved in autophagy; autophagin 3; autophagy-related 4C-like; AUT-like 1, cysteine endopeptidase; APG4 (ATG4) autophagy-related homolog C product : APG4 autophagy 4 homolog C protein_id : NP_778194.2

name	EG638698 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:638698
definition	number : 1 pseudo : _no_value

name	LOC669426 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669426
definition	number : 2 pseudo : _no_value

name	LOC669426 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669426
definition	number : 1 pseudo : _no_value

name	LOC384106 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384106
definition	number : 1 pseudo : _no_value

name	LOC100039541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039541
definition	number : 1 pseudo : _no_value

name	LOC100039541 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039541
definition	number : 2 pseudo : _no_value

name	LOC620883 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252797 GeneID:620883
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 241 ESTs, 11 Proteins product : similar to Heterogeneous nuclear ribonucleoprotein C (C1/C2) pseudo : _no_value transcript_id : XR_034033.1

name	LOC100039459 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252785 GeneID:100039459
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : similar to ribosomal protein S11 pseudo : _no_value transcript_id : XR_030941.1

clone name	MSMg01-138A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088F05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-122L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492K22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-137I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266C22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-102A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538P14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-531E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071L19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-106B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-286G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056H15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-483I16.T7 (MSMg01no483_i16.b1)	MSMg01-483I16.TJ (MSMg01no483_i16.g1)
ACC	AG563446	AG563447
length	777	1,030
length of high quality (start - end)	572 (76 - 647)	---
definition	CHROMAT_FILE: MSMg01no483_i16.b1 PHD_FILE: MSMg01no483_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:47 2005	CHROMAT_FILE: MSMg01no483_i16.g1 PHD_FILE: MSMg01no483_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:47 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCG CGGAATTCCACACATTTCGCTCATGATTGAAATCAGGGAGGCTCAAATCC TAAAACAAAAACAGAAACAAAAAAACAAGGAAATGAAGGTTAAAAATGTT CCCATCAAGTTACGCAGACACATTTCTGCTTCTCTTCTCAGCTGGGGATG CACTGTAGGCCTTTATGCATGCTACGCAGTGCTCCATCACTGACTTAGCT TCTAGCTCATGATAGATATCGGAACACCTTAGCCTATCAACATACTTTCT CCCTTACTCTTACAGTAGTGTTATATTTTATAAAAAAGGTCACAAGGTGC ATGAGACAGCTCAGTGGATAAGGTGTTTGCCAACAAGCCTGATGATGCGA CTTCAATCTCCAGAATGCACGCGGCAGAAGGTGAGAATAGACTTCTCCAG ATATGCCATGGTAAGCACATGCATTCATTCACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACAAACACCG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTCTAGGTATCCAGGAG AGGGTGTTGGAGACTCTGCAGTAACTTAGAAATAAACTCAAGTCCTTTAT GAGAGTACTATGTGCTCTATAAGAAAGAAATTTAAGCCAAGCATGGTGGT TTATGCCTGTTTATCCCACCCCTCAGT	ATCCATTACTCATAGATTGTCCCGTGTGCGTCGCCAGTCTCCCACACACC TCCCGTGACACCCCCAGAACTTATCCCTCTCGAACTATTCTAGCCCGCGA CCACTATATAAAANAATGAGTTCTACCTTGCCTCGTTGTGTCGACACCCA CGTTGATATAATCCGCTCCACCTGACGCCCCTGCCACACGATAATATGTT ATTTAGTTCCGTATTGTGTTTCACGTGCTTTTCTTGATTCGCCCACGCAC AGCAAGCACGCGCAAATGTCAGCGTCAAGTATTAGTATATGAGTATCACC CTCCTCCCCCCGCCGCATAATTCATCCACCTACTATGCCAATCCCTATAA CAGCCTCTTTTCTCGACTAATGATCTCACGCCCATCCGGGTATTCCTCCT TATTTAGTTTATGTATTAGTAATAGGCTGCTGTGTGCTATATATAATGCC CCGCGGACTGACACGCTAGCATTGCCCCACCTTACAGGTTATAATTCATA TAGANATANNNCGTTTCCTCATTAATTATTCTTACTATCTTCACCGCGAC CCATATCTCGCGCCGGTCATATTCAATATATTCTCCGCGCGATCCGCCGC CTCTTATTAGTCACCCGTCTTAACTCGTTTTCACCTCTTATTTTTACATT CGTCCTCGCACTCGTACCCCTCTATTTGTTTCCTCTACACCGCGCGTCTT CGAATATTATATTACGCTCCTCTGGAGTTTGCCCTCATGTAGGCCCGGTT TATGTAACTACTCCGCGTAACACACGTTAATCACCCGGCTCCGCCTGCCG CTTCCCCGCGCGCCGCTCTTTCTGTATCGAGGACTGGCCGCGCGAGGCTG TTGCGACGCTTTTGCATTATCCGTTTCGCGCGCCGGGTTGATATTGTGCT ATAACGCTGTAGCGATGCGCACCGCGCCACATCACATAGCTCCTCGTACC ATTGTGCGACGAGAACTGCAGTAGTGTACCGTCTTGGATATTAATATACA CGCCATGTGAGTGTCTACGGCTCCNCGNTG
quality values	Open. Hide. 0 3 6 8 8 8 8 8 10 11 14 30 26 33 33 33 33 33 30 30 30 26 24 37 37 37 41 46 30 28 25 19 21 8 10 6 9 9 6 6 6 10 9 11 11 11 11 11 11 15 22 34 31 31 31 31 39 33 33 30 21 17 10 9 9 10 10 9 10 10 10 11 13 12 15 12 22 22 37 37 37 50 53 53 53 50 50 50 50 50 50 53 53 53 53 53 53 57 68 68 68 68 68 68 51 50 50 50 51 51 50 50 50 50 50 68 68 57 57 54 57 57 57 46 57 39 39 35 41 57 48 48 48 50 50 50 68 68 68 68 68 68 68 68 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 42 42 35 42 43 46 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 57 57 53 53 50 50 59 59 59 27 27 12 18 11 11 11 11 11 17 21 20 34 34 59 59 59 50 53 53 57 57 57 59 59 59 59 59 59 59 59 59 59 57 53 53 53 68 68 57 57 43 48 43 43 43 48 48 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 68 57 57 57 57 57 44 44 47 43 43 35 37 37 50 50 59 59 68 68 68 68 57 57 59 59 57 57 57 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 54 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 59 59 59 57 57 57 59 59 59 59 59 54 54 57 59 59 59 59 59 59 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 50 43 43 39 39 41 41 32 32 20 18 24 30 30 32 25 20 23 20 32 22 22 20 22 22 15 15 12 12 12 21 21 14 14 13 21 19 28 23 16 12 10 10 13 14 18 23 17 15 8 8 6 10 8 8 10 21 16 28 28 21 19 20 27 21 19 19 20 10 13 8 8 8 7 9 9 9 9 9 11 11 11 17 12 18 15 26 15 20 20 23 16 11 8 8 8 11 8 9 11 9 9 9 16 8 8 8 7 8 8 8 8 8 9 9 12 17 11 11 11 12 12 12 12 9 9 10 9 9 9 10 9 8 9 10 10 8 11 11 14 14 12 12 9 9 9 10 9 9	Open. Hide. 6 8 8 6 8 8 10 9 9 8 8 8 8 8 8 6 7 8 8 12 12 8 10 10 10 10 13 15 9 9 8 8 8 8 11 9 9 6 6 6 7 6 6 9 9 6 6 6 6 6 6 6 6 14 15 15 8 8 8 8 10 9 9 9 9 8 8 8 6 6 6 6 11 12 9 9 6 8 8 8 8 10 12 8 8 8 8 8 10 10 10 10 10 8 10 8 8 8 8 10 12 12 11 11 12 10 9 9 9 9 11 15 3 0 3 8 8 6 6 8 8 9 9 9 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 10 10 12 13 8 6 6 6 6 8 8 6 6 6 8 8 8 8 8 8 8 8 12 13 12 12 9 7 8 8 10 10 8 8 8 8 8 8 8 8 7 7 10 10 8 9 9 8 10 8 8 8 8 8 8 10 13 8 8 8 8 10 8 8 6 6 9 9 8 8 8 8 8 8 10 10 10 8 8 8 8 6 6 6 8 6 6 8 8 10 8 8 8 8 8 10 10 8 8 8 8 8 9 9 9 10 10 16 16 9 9 9 7 8 8 8 8 8 8 10 10 13 11 10 10 10 8 6 6 6 6 8 8 8 8 8 7 6 8 8 6 6 8 8 8 9 8 8 8 8 11 9 9 9 10 12 14 14 8 8 8 8 8 8 8 6 7 6 8 11 9 10 9 8 8 8 8 10 11 6 6 8 8 8 6 6 8 8 10 10 8 8 8 8 8 8 8 6 6 8 10 8 8 10 10 9 10 9 8 8 8 10 10 12 15 8 8 8 8 8 8 8 10 8 8 6 6 8 6 8 8 8 8 12 11 10 10 9 10 13 10 10 11 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 10 10 10 10 9 9 10 6 6 6 6 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 6 7 8 8 11 10 11 13 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 8 10 9 10 8 8 8 8 8 9 9 9 9 11 11 8 8 8 8 8 8 10 10 10 8 8 8 8 12 11 10 8 8 8 7 7 3 0 3 17 3 0 0 0 3 9 9 11 11 11 11 8 9 8 8 7 9 8 8 8 8 8 10 8 8 8 6 6 8 8 11 13 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 15 19 11 10 8 8 8 8 8 7 7 7 8 8 8 8 9 10 10 8 8 8 11 13 11 10 12 11 10 6 6 6 6 6 6 8 8 8 8 8 8 8 10 10 13 10 11 11 12 10 10 9 9 9 8 6 6 6 8 8 8 8 8 8 8 9 9 8 8 8 8 8 10 12 10 8 8 8 10 10 10 10 8 8 8 10 8 8 8 8 9 9 9 10 8 8 8 8 8 10 6 6 8 8 9 10 10 12 10 10 13 16 15 10 10 10 10 10 12 7 6 6 6 10 8 10 10 8 6 6 6 7 8 7 8 8 8 8 8 8 8 8 13 12 10 8 8 8 6 6 8 8 8 8 13 9 7 8 6 6 8 8 8 8 10 12 8 8 8 8 13 13 13 13 14 14 14 12 19 15 10 9 7 10 8 8 6 6 8 8 10 6 6 8 8 9 9 9 10 8 10 10 10 9 9 9 9 9 9 13 10 8 8 8 8 8 8 8 8 8 8 8 8 11 10 9 9 12 10 8 8 8 8 11 12 12 8 8 8 6 6 8 6 8 8 8 10 17 10 10 12 10 8 8 8 8 8 10 11 11 15 15 13 11 11 11 11 11 10 9 8 8 8 8 8 8 6 6 8 6 8 8 10 10 7 6 6 6 9 9 9 6 8 6 6 8 8 8 10 10 8 8 8 10 9 8 8 8 8 8 8 10 13 11 6 6 6 8 8 9 12 9 8 6 6 6 8 7 7 10 10 8 8 8 9 8 13 8 8 8 7 6 8 8 9 8 9 8 8 8 8 8 8 8 8 6 6 6 7 10 7 7 6 8 8 8 8 8 8 8 10 8 8 6 6 8 8 8 8 8 8 11 11 11 12 9 9 9 6 8 6 6 8 8 8 8 8 8 8 6 8 6 6 6 6 8 6 6 6 6 7 10 10 8 6 6 6 6 6 6 9 8 8 15 15 15 8 8 8 10 10 8 6 6 6 10 8 10 10 8 9 9 7 7 6 8 8 8 8 8 8 8 6 7 7 8 8 9 9 10 8 8 8 6 6 8 6 3 0 3 3 0 3 3

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no483_i16.b1 MSMg01no483_i16.b1 CHROMAT_FILE:
MSMg01no483_i16.b1 PHD_FILE: MSMg01no483_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:47 2005
         (572 letters)



>mm_chr4_98022148_98023123
          Length = 976

 Score =  710 bits (367), Expect = 0.0
 Identities = 456/493 (92%), Gaps = 16/493 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaatcagggaggctcaaatcctaaaacaaaaacagaaacaaaaaaacaaggaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attgaaatcagggaggctcaaatcctaaaacaaaaacagaaacaaaaaaacaaagaaatg 260

                                                                       
Query: 61  aaggttaaaaatgttcccatcaagttacgcagacacatttctgctt----ctcttctcag 116
           ||||||||||||||||||||||||||||||||||||||||||||||    |||||| | |
Sbjct: 261 aaggttaaaaatgttcccatcaagttacgcagacacatttctgcttgtttctcttccc-g 319

                                                                       
Query: 117 -ctggggatgcactgtaggcctttatgcatgctacgcagtgctccatcactgacttagct 175
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 actggggatgcactgtaggcctttatgcatgctaggcagtgctccatcactgacttagct 379

                                                                       
Query: 176 tctagctcatgatagatatcggaacaccttagcctatcaacatactttctcccttactct 235
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 380 tctagctcatgatagatatcggaacaccttatcctatcaacatactttcccccttactct 439

                                                                       
Query: 236 tacagtagtgttatattttataaaaaaggtcacaaggtgcatgagacagctcagtggata 295
           ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacagtagtgttatatgctattaaaaaggtcacaaggtgcatgagacagctcagtggata 499

                                                                       
Query: 296 aggtgtttgccaacaagcctgatgatgcgacttcaatctccagaatgcacgcggcagaag 355
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 500 aggtgtttgccaacaagcctgatgatgtgacttcaatctccagaatgcacgtggcagaag 559

                                                                       
Query: 356 gtgagaatagacttctccagatatgccatggtaagcacatgcattcattcacacacacac 415
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 560 gtgagaatagacttttccagatatgccatggtaagcacatgcattcattcacacgcgcgc 619

                                                                       
Query: 416 aca--cacacacacacacacacacacacacacacacacacacacacacacacacaaacac 473
            |   | | | | | ||||||||||||||||||||||||||||||||||||||       
Sbjct: 620 gcgtgcgcgcgcgcgcacacacacacacacacacacacacacacacacacaca------- 672

                        
Query: 474 cgagagagagaga 486
            ||||||||||||
Sbjct: 673 -gagagagagaga 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 976
Length adjustment: 10
Effective length of query: 562
Effective length of database: 966
Effective search space:   542892
Effective search space used:   542892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information