Query= MSMg01no483_l18.b1 MSMg01no483_l18.b1 CHROMAT_FILE:
MSMg01no483_l18.b1 PHD_FILE: MSMg01no483_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:03 2005
(149 letters)
>mm_chr4_141493745_141494294
Length = 550
Score = 180 bits (93), Expect = 3e-50
Identities = 127/143 (88%), Gaps = 12/143 (8%)
Strand = Plus / Minus
Query: 1 ccaaggccggcataagactgggcctggagacatcctg--gatggga-ggatgtggtgcac 57
||||||||||||||||||||||||||||||||||||| | |||| ||||| || || |
Sbjct: 330 ccaaggccggcataagactgggcctggagacatcctgtcg--gggagggatgcggagcgc 273
Query: 58 acaaggccctgcccttcctgaagatccataggcagctaatgattgacagggtgaaggggt 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 272 acaaggccctgcccttcctgaagatccataggcagctaatgattgacagggtgaagggat 213
Query: 118 a------gggagagggagggaga 134
| ||||||||| ||||||
Sbjct: 212 aaggagggggagaggg-gggaga 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 550
Length adjustment: 8
Effective length of query: 141
Effective length of database: 542
Effective search space: 76422
Effective search space used: 76422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no483_l18.g1 MSMg01no483_l18.g1 CHROMAT_FILE:
MSMg01no483_l18.g1 PHD_FILE: MSMg01no483_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:03 2005
(616 letters)
>mm_chr4_141280359_141281374
Length = 1016
Score = 1129 bits (584), Expect = 0.0
Identities = 608/616 (98%)
Strand = Plus / Plus
Query: 1 tcctcctgacagaagcttcccaacccaacaaacccgcatttacgacgagctaatctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcctgacagaagcttcccaacccaacaaacccgcatttacgacgagctaatctgtct 260
Query: 61 tgaattggttcatttcaccgtcatccaggagcagagactgcaggatcactacaagcacaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaattggttcatttcaccatcatccaggagcagagactgcaggatcactacaagcacaa 320
Query: 121 ggatttccactcctggctccatggagcgaggagcctcctccagcagaacaggaaggaaat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatttccactcctggctccgtggagcgaggagcctcctccagcagaacaggaaggaaat 380
Query: 181 gggaagcagggtggctgtggatgctgcaagaacttcactttgcagaaaagacagaataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagcagggtggctgtggatgctgcaagaacttcactttgcagaaaagacagaataca 440
Query: 241 tatgtttaagacttttacaaaaacagaagtggagacgctgggaccacaggacagggctga 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggcgcaagacttttacaaaaacagaagtggagacgctgggaccacaggacagggctga 500
Query: 301 aattaagcatccgtgacagaaagcccagctgctgtgcccaacgaaaagaaaattgcaatg 360
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aatcaagcatccgtgacagaaagcccagctgctgtgccaaacgaaaagaaaattgcaatg 560
Query: 361 aaaatgtcagctagagagcctttcaaaatggagttaggaaacttaagtaaggtttgtgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaatgtcagctagagagcctttcaaaatggagttaggaaacttaagtaaggtttgtgag 620
Query: 421 gatgccagatgccccacaggatgtgaactccaatcaccccactgtgattgcgtctccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgccagatgccccacaggatgtgaactccaatcaccccactgtgattgcgtctccaca 680
Query: 481 gttagtgggcaccaagatgtttattgtggcatgaattgttcctttagaaatttaaaactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttagtgggcaccaagatgtttattgtggcatgaattgttcctttagaaatttaaaactg 740
Query: 541 taaaccaggcagtggcggtgcacatctttaaccccagcacttgagaggaggcagaggcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaccaggcagtggcggtgcacatctttaaccccagcacttgagaggaggcagaggcag 800
Query: 601 gtggatctctatgagt 616
||||||||||||||||
Sbjct: 801 gtggatctctatgagt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
