BAC Information

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BAC

Clone NameMSMg01-484G14
Chromosome4 (Build37)
Map Location 65,125,166 - 65,125,840
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484G14.T7 (MSMg01no484_g14.b1)MSMg01-484G14.TJ (MSMg01no484_g14.g1)
ACCAG564105AG564106
length1,625753
length of high quality
(start - end)		---675 (79 - 753)
definitionCHROMAT_FILE: MSMg01no484_g14.b1 PHD_FILE: MSMg01no484_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:58 2005CHROMAT_FILE: MSMg01no484_g14.g1 PHD_FILE: MSMg01no484_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCACACTAACAATCATATACCCGCGCCCGCCTCAAACATAAATAGCGGTA
TTTCTCTCTCTCTTTATATGTGTGTATTTTGCGTTGGTGTGTCGTGTGCG
TCCTATTCTCTCTCTCGCACGACGTAGTTGGGCATTGATTATGTTTTATC
GATTATATCGTTCCCTCGAACTTATGTTCACCGCCGTACGTTTATGCTCT
CCCGTGTCGTGTTGNTTCTGTTGACTCCGCGCTATGCTTTGTCTCGATTA
CTATTTGTTAGTATGACACCGCTCATATACTTATGTCGCGCCACCGTCAT
GACCCCGNGGTAGAATGTAGAGTCGCGGGGNCGGCGCGGTCGCCGGAGTA
GCCTCCGACTCTGCTCTCCGGACATAATATACCTGTTGTCTTNCGCCTCA
CACGTTNTATGTCACTTNTCTCCTATGCTCTTTTACTCTCCGCGCGCCCC
TTGNCGTCGTCGCGCTGTGTTGTTTCTGCCGCGACACAGGTGGCAGCGGT
TCTCCATCGGGGTAATATAACTGGCGGTTTATAGTGTTACATTTCTTGTA
CGCCTGTGTGCGTTGGGCCGCGAGCGGAGNCACGAGGAGAGATACAAAAT
ATAAAATATATAAATCTATTGCATACACACGACAACGCACCTCCGTCTTA
TTGTCGCGCTGTCCACCACCACGCTCCATATTATGCATCACCATTCTGCT
TCTGCGTGATTTATGCGCGGACGGANGTGTATGAGACTGCTCGCGCACGG
TAAGCGTCGGTGCGTCGTTGGTTCCGTGCTTCGGNGTCATACATTGTTTT
ACGCGCCTACTCTCTCTCGTCTCTCTATATATNATTATACTTCTGTCGCA
ATAAGCACTGATTCGTGTGCGAACTGCGTGCTCGTGTCGCAGGTAGTTGT
TGCTCATGTCGACTCGCGGNTGTGCGCGCGGAGCTTCGTGTCTCTATGAC
GAGACCAGCAACAGACGATGCTGCAATCCACCTTTTATTCACTGTACTGG
CTGTCAGAGAACATATCACTAGCCTCCGCGNCACCATGCTCTCTGTTCTC
GCCGNGCTGTCCCGCTGTCATGTTTGCGACGTGATGATAGTCTGCGTCTC
GCGACACATTTATTATCCACTCCACCGCACCGTACTTGCTACCTCGTCGC
TAGTGTCATATATGAATATTNGCTCATCGTCGGACATCGCGTGCGATCGT
GGCATTATATTAGTAGCGTTGTGTCTATATATATATATCTACTACGCGCG
CCGCTCGCTTCCATATATATGTCGTCAATCACTAGAACNTCACGTCGCAC
TATACTTATTGCGTGCTCACCTCGTCTTTCGTCGCCGCGCGACTGGCGCC
GNCGCGCACGCGCCGCTTCGTATCTCCGACTACGTCCCGCGCTCTGCTTC
GCTACTATGATATCACCCCCGTCTGCGCTCGCGCTCGTATTATGCGGATA
TGACTACTATGACTGTGCTGTCGAGCGACGTAGCATCATTATTGATGATC
AGCACTCTATGTCGATCGTCACTNACGNCTAGCNGNTNATGTGTGTGTAG
CCNCGCGCACTCGATGTACGTCTATGNCATCACTATAAACGCACGTGCGC
TCTGCGCTGCTACGCGNCCGTGCGN

NCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGCATGCAAAGCAAAGAA
AACATATTCAAAGCAGTGAGAGAGAAGCATTAAGTTACACATCAACATGA
ATCCATGAGAATAGCAGACTTCTTAACAAAAGCTCACGACTAAGAAGACA
TGGACTATATTTTTTAAATTCTGAAATGCAATAGCTGCCAACCCAAACTA
CCATGTTCAGCAAAACTGAAGAATGAGAAACTTTTCATGATAAACACAAA
CTAAATGTTTAATGTCCACTAATGTGATGCAGCAGATGATACTAGAGGGA
ATCTATACATCAAAGAAACAAATTCATACATGAGGATACAGAAGGATTCT
CCCAACCTCAGCATCTATCATGTACCAATAGCCTTTCAGAAGATAGGGAC
TTTCTTTTTCAGAGGGTGGTCACAGGTAGAGCTCCTGTACTCTATTGGCA
ACATCATGTCCATTTGGTACCTAACTGGACATAGTGAATTATCAAAAGAA
GCAGAAGAAGAGTAGGAAGAGGAGAGGAAGAAGAAGAAAAGAAGAAAGAA
TGAAAAAGTGTGTTGATAGATATGTGTTGGTTAAAGATGGAAATGGATGT
AGATATGATCATATATCTCTGTATACATGTTTGAAATTATCAATAAAAAT
AAATGTAGGAAGAGTGTGTGAAAAGGACTTCAAAATCTCTGGAAATAATC
ACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_g14.g1 MSMg01no484_g14.g1 CHROMAT_FILE:
MSMg01no484_g14.g1 PHD_FILE: MSMg01no484_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:58 2005
         (675 letters)



>mm_chr4_65124966_65126040
          Length = 1075

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgcatgcaaagcaaagaaaacatattcaaagcagtgagagagaagcattaagttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgcatgcaaagcaaagaaaacatattcaaagcagtgagagagaagcattaagttac 260

                                                                       
Query: 61  acatcaacatgaatccatgagaatagcagacttcttaacaaaagctcacgactaagaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatcaacatgaatccatgagaatagcagacttcttaacaaaagctcacgactaagaaga 320

                                                                       
Query: 121 catggactatattttttaaattctgaaatgcaatagctgccaacccaaactaccatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catggactatattttttaaattctgaaatgcaatagctgccaacccaaacttccatgttc 380

                                                                       
Query: 181 agcaaaactgaagaatgagaaacttttcatgataaacacaaactaaatgtttaatgtcca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 agcaaaactgaagaatgagaaacttttcatgataaacacaaactaaatgtttgatgtcca 440

                                                                       
Query: 241 ctaatgtgatgcagcagatgatactagagggaatctatacatcaaagaaacaaattcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatgtgatgcagcagatgatactagagggaatctatacatcaaagaaacaaattcata 500

                                                                       
Query: 301 catgaggatacagaaggattctcccaacctcagcatctatcatgtaccaatagcctttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaggatacagaaggattctcccaacctcagcatctatcatgtaccaatagcctttca 560

                                                                       
Query: 361 gaagatagggactttctttttcagagggtggtcacaggtagagctcctgtactctattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagatagggactttctttttcagagggtggtcacaggtagagctcctgtactctattgg 620

                                                                       
Query: 421 caacatcatgtccatttggtacctaactggacatagtgaattatcaaaagaagcagaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacatcatgtccatttggtacctaactggacatagtgaattatcaaaagaagcagaaga 680

                                                                       
Query: 481 agagtaggaagaggagaggaagaagaagaaaagaagaaagaatgaaaaagtgtgttgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagtaggaagaggagaggaagaagaagaaaagaagaaagaatgaaaaagtgtgttgata 740

                                                                       
Query: 541 gatatgtgttggttaaagatggaaatggatgtagatatgatcatatatctctgtatacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatatgtgttggttaaagatggaaatggatgtagatatgatcatatatctctgtatacat 800

                                                                       
Query: 601 gtttgaaattatcaataaaaataaatgtaggaagagtgtgtgaaaaggacttcaaaatct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtttgaaattatcaataaaaataaatgtaggaagagtgtgtgaaaaggacttcaaaatct 860

                          
Query: 661 ctggaaataatcaca 675
           |||||||||||||||
Sbjct: 861 ctggaaataatcaca 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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