NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCATTTGTTTACTTGTTTGGTTTGGTTTGTTTGTTTGTG
ACTGACCCTGAAGAATGCTACTAGTAAGTCAAAATGTTATGATTATAATA
CTCACACCCTGTTATCTCAATGTCCTGAAATTCCCCTGTTCACCCACATA
CCACCCCCTTTATCTTACTCAGGACCAATCAGCTTAAAGGTTAGCTGATA
ATACTGTGCCTAGTAAGCCTCCTTGTCCTTTAAACGTTTGAAGCTGGTTT
TTCCTATGAAAAGCCTACCTTAGAGCAGACTGTACTGTAATTTGGCTCCC
ACAGTCCTAGACATCCGGTATTAAGGTATGCATTCAATAAACTATTTTTG
CTTAACTGAGATCAGTGTTTATTTGATTTGAGTATCAATTCCTGAACCCC
TACAGACAGAATGAGTCAGAGTAAGGTATGTTTAACTCACATGATACTAG
CAGAGGAAGGGGGAACGGGGAGTTTTACCAGGATGGTTTTACAGAGACAG
CCTGGAGGTGAAGACAGAATGAGCCAGAGAATAAAGAGTCAGAAGATAAG
AATATATTGCCAAAGGTAGTTTGAGGCCAAGTTGAACAATTTAGTCAGAA
AGTCAGATTGAATCAGTAGCCTGGAGAGGAATTTTGATCCAAAACAACTG
AGTTGAACCAGTTAGCCAGAATACAGAAGGAACAGTGAGATAGAAAGGGT
GAGCTTATT

CATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACTCAGAGAAA
CCCTGTCTCAAAACAACAACAACAACAAAAGTTTCCTATCAAGAAATCAA
GAATCTGCTTTAATTTAATAAAATTCATATAAGCTATCATTCTTTTTACA
TCCGTAGATATAAGGACTGATTATGTCTTACTTGGATGTACTTCAAGAGT
CCCACTGATATTTTTTTAATATACTTTATTTAAAATTAGTATTATATTAC
ATTTATCATTATTATTATTATTATTCATTAATCTTTTTTATACTCCAGTT
GTTATTCCCCTCCTGGTCTGCCCTCTGACAGTTCCTCATTCCATTCCTCT
CCTCCTCATTTCCAAGAGGATTTTCCCACCCCCAAACCTCACCAGACCTC
CCCACCCTCTGGGGCCTCAAGTCTCTCAAGGGTTAAGTGTACCTTGTCTC
ACTGAGGCCAGACCCAGAAGTCCTCTGCTGTATATATGTGTCAGGGCGTC
ATATGAGATAGTGTATATTGCCTGGTTGGTGGCTCAAACAAACAAGAAAC
TGCACAAATAAAGAAAACTCTGTGACCATAGACCATAGAATAATAATAAT
TTTATGCTAAAATTTATAATAAAATAATGTAATGAATTTTTTGGTGTGTG
GGTTGGCCAACAAGTTCATTTTTTAAATTAATTTATTTTTTTACAGNCCA
TATTTTATTCTCCATCCTGTCTA

Query= MSMg01no484_g19.g1 MSMg01no484_g19.g1 CHROMAT_FILE:
MSMg01no484_g19.g1 PHD_FILE: MSMg01no484_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:59 2005
         (621 letters)



>mm_chr4_92681929_92682949
          Length = 1021

 Score =  694 bits (359), Expect = 0.0
 Identities = 428/487 (87%), Gaps = 57/487 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctactcagagaaaccctgtctcaaaacaacaacaacaaca------ 54
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 487 caggacagccagggctactcagagaaaccctgtctcaaaacaacaacaacaacaacaaca 428

                                                                       
Query: 55  -----------------------aa-agtttcctatcaagaaatcaagaatctgctttaa 90
                                  || ||||||||||||||||||||||||||||||||||
Sbjct: 427 acaacaacaacaacaacaacaacaagagtttcctatcaagaaatcaagaatctgctttaa 368

                                                                       
Query: 91  tttaataaaattcatataagctatcattctttttacatccgtagatataaggactgatta 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttaataaaattcatataagctatcattctttttacatccgtagatataaggactgatta 308

                                                                       
Query: 151 tgtcttacttggatgtacttcaagagtcccactgatatttttttaatatactttatttaa 210
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 307 tgtcttacttggatgtacttcaagagtcccactgatattcttttaatatactttatttaa 248

                                                                       
Query: 211 aattagtattatattacatttatc---------------------------attattatt 243
           ||||||||||||||||||||||||                           |||||||||
Sbjct: 247 aattagtattatattacatttatcattattattattattattattattattattattatt 188

                                                                       
Query: 244 attattattcattaatcttttttatactccagttgttattcccctcctggtctgccctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 attattattcattaatcttttttatactccagttgttattcccctcctggtctgccctct 128

                                                                       
Query: 304 gacagttcctcattccattcctctcctcctcatttccaagaggattttcccacccccaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gacagttcctcattccattcctctcctcctcatttccaagaggattttcccacccccaaa 68

                                                                       
Query: 364 cctcaccagacctccccaccctctggggcctcaagtctctcaagggttaagtgtaccttg 423
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 67  cctcaccagacctccccaccctctggggcctcatgtctctcaagggttaagtgtaccttg 8

                  
Query: 424 tctcact 430
           |||||||
Sbjct: 7   tctcact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)