BAC Information

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BAC

Clone NameMSMg01-484H06
Chromosome4 (Build37)
Map Location 119,910,762 - 120,058,386
singlet/doubletdoublet
Overlap geneFoxo6
Upstream geneLepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
Downstream geneScmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484H06.T7 (MSMg01no484_h06.b1)MSMg01-484H06.TJ (MSMg01no484_h06.g1)
ACCAG564137AG564138
length730738
length of high quality
(start - end)
394 (82 - 475)656 (83 - 738)
definitionCHROMAT_FILE: MSMg01no484_h06.b1 PHD_FILE: MSMg01no484_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:01 2005CHROMAT_FILE: MSMg01no484_h06.g1 PHD_FILE: MSMg01no484_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,910,762 - 119,911,155)(120,057,731 - 120,058,386)
sequence
CCTCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGAG
CCGCGGAATTCTTTCATTCTACAAACTTGCGGAGGATTCCTGAGGGGGAC
TCTGCTGCATGGTGCCTTCTCTTGGGGACCCAGGCTTGAAGAGACTCCAT
GTCCAGCTTCCACAATGAGGCACATGGGGCAACATTGCATAGTACCATCT
CCCAGTAGCAGCTCTGGAAATGACAAGTGGCCCTTGGCCCTTGGTCACAC
CTCCCTACCCCCATGCAGGTCTCATGGTCTCACACACCACCTCCCTCCAA
GGGCAGGGAAGGGTGGTAGTTTCTCAGGGTATATTTGGTAGAAAGCACTA
AAGCCTACAGTGGGCAGATCCATGGATAAGATCTATGGAGGAAAATGGTG
TGAAGGAGAGACAGAGGGTGACATTTATTTCTAATTATGGTGGTAGAGTG
AGTCCTCTAAGAAGGTGACACTGAAGCAAGGGTCCATGAAGAGACCCCCT
ACAGAGGGTTAACAGGAGTAAAGATCTTGAGACAGGTACAAGGCCACGAG
TCCCAGTAAGTGGGAACAGTCCCCCCGGGTAATAAGAACCCCCCTTGGGG
GAACGGGTTGGGTTTCACAGGGAATAAAACCCCCGGGTTGGTTCGGGGGT
TGGGTGGGTTTTCCCAATTTTGAAATTTTTTTTTTTCGCAGGAAAGGGGG
CCAAAAATCGCCGTGTTGTGGAGCCGCTAA
CCTACTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAGGACAAGGGTGCT
GTCCTCAGAACAGTGTTACCTGTTAGCCTGTGGGTTATGTATAGGGCCGG
GGGAGGCTGCATTGAGGCAGTTGGGTTGCCTGGAAAGGGTGGGCCAGCTC
TCTCATCCCTTCTTTCTGGGTGTGGAGGTGCTCACAGCCTGGATAGAGCA
GGCAGGGAATGAGGGCACAGTCCTGCTTGGCATGTCCTCCACACTTAACT
CTGTGGACTTACTTCCTTGTCTCCTATCTGGGAGACAGATATAGTACTCT
ACCTCCAGGGTAGTCACGGAGGAATCAATGATACAGACTGGCAGGCAGAT
AGGTTCCTACAAATATTCACCTCTCCTTGTCCTGCTTTCTTTTCCTGCCC
ATGGAAGTAATTGCCCAGATTTTGCTAGAGACTGGTTAGACCAGGGGTTC
CATGTCTCTAATTCCCAGGTTAGTAATTTACCCACTCTGTATAATCTAAA
GAAAAGATCTTGTGACCAAAAAAAAGTGTATATGTGCAAGTTTCTATCTG
TTCCTCCATTATTATATGGCACAGGGATGAGCATCTACCATTTAAATCTT
TTCTAACATTCCACACCAAGGCTTCCCAGAAACACATCCTGTAGTCAAAG
CTGCATGATCCCACACTGTACAAAGGCCAGGGCACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_h06.b1 MSMg01no484_h06.b1 CHROMAT_FILE:
MSMg01no484_h06.b1 PHD_FILE: MSMg01no484_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
         (394 letters)



>mm_chr4_119910562_119911355
          Length = 794

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggattcctgagggggactctgctgcatggtgccttctcttggggacccaggcttgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggattcctgagggggactctgctgcatggtgccttctcttggggacccaggcttgaag 260

                                                                       
Query: 61  agactccatgtccagcttccacaatgaggcacatggggcaacattgcatagtaccatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactccatgtccagcttccacaatgaggcacatggggcaacattgcatagtaccatctc 320

                                                                       
Query: 121 ccagtagcagctctggaaatgacaagtggcccttggcccttggtcacacctccctacccc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ccagtagcagctctagaaatgacaagtggcccttggcccttggtcacacctccctactcc 380

                                                                       
Query: 181 catgcaggtctcatggtctcacacaccacctccctccaagggcagggaagggtggtagtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 381 catgcaggtctcatggtctcacacaccacctccctccaagggcagggaagggcggtagca 440

                                                                       
Query: 241 tctcagggtatatttggtagaaagcactaaagcctacagtgggcagatccatggataaga 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcagggtatatttggtagaaagcactaaagcctacagtgggcagatccatggataaga 500

                                                                       
Query: 301 tctatggaggaaaatggtgtgaaggagagacagagggtgacatttatttctaattatggt 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tctatggaggaaaatggtgtgaaggagaggcagagggtgacatttatttctaattatggt 560

                                             
Query: 361 ggtagagtgagtcctctaagaaggtgacactgaa 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtagagtgagtcctctaagaaggtgacactgaa 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no484_h06.g1 MSMg01no484_h06.g1 CHROMAT_FILE:
MSMg01no484_h06.g1 PHD_FILE: MSMg01no484_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
         (656 letters)



>mm_chr4_120057531_120058586
          Length = 1056

 Score = 1222 bits (632), Expect = 0.0
 Identities = 650/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaggacaagggtgctgtcctcagaacagtgttacctgttagcctgtgggttatgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 atgaaggacaagggtgctgtcctcagaacagtgttacctgttagcctgtgggttatgtat 797

                                                                       
Query: 61  agggccgggggaggctgcattgaggcagttgggttgcctggaaagggtgggccagctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agggccgggggaggctgcattgaggcagttgggttgcctggaaagggtgggccagctctc 737

                                                                       
Query: 121 tcatcccttctttctgggtgtggaggtgctcacagcctggatagagcaggcagggaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcatcccttctttctgggtgtggaggtgctcacagcctggatagagcaggcagggaatga 677

                                                                       
Query: 181 gggcacagtcctgcttggcatgtcctccacacttaactctgtggacttacttccttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gggcacagtcctgcttggcatgtcctccacacttaactctgtggacttacttccttgtct 617

                                                                       
Query: 241 cctatctgggagacagatatagtactctacctccagggtagtcacggaggaatcaatgat 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctagctgggagacagatatagtactctacctccagggtagtcacggaggaatcaatgat 557

                                                                       
Query: 301 acagactggcaggcagataggttcctacaaatattcacctctccttgtcctgctttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acagactggcaggcagataggttcctacaaatattcacctctccttgtcctgctttcttt 497

                                                                       
Query: 361 tcctgcccatggaagtaattgcccagattttgctagagactggttagaccaggggttcca 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 496 tcctgcccatggaagtgattgcccagattttgctagagactggttagaccaggggctcca 437

                                                                       
Query: 421 tgtctctaattcccaggttagtaatttacccactctgtataatctaaagaaaagatcttg 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgtctctaatccccaggttagtaatttacccactctgtataatctaaagaaaagatcttg 377

                                                                       
Query: 481 tgaccaaaaaaaagtgtatatgtgcaagtttctatctgttcctccattattatatggcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaccaaaaaaaagtgtatatgtgcaagtttctatctgttcctccattattatatggcac 317

                                                                       
Query: 541 agggatgagcatctaccatttaaatcttttctaacattccacaccaaggcttcccagaaa 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 316 agggatgagcatctaccatttaaatcttttctaacatttcacaccaaggcttcccagaaa 257

                                                                   
Query: 601 cacatcctgtagtcaaagctgcatgatcccacactgtacaaaggccagggcacacc 656
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 256 cacatcctgtagtcaaagctgcgtgatcccacactgtacaaaggccagggcacacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)