Query= MSMg01no484_j09.b1 MSMg01no484_j09.b1 CHROMAT_FILE:
MSMg01no484_j09.b1 PHD_FILE: MSMg01no484_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:12 2005
(668 letters)
>mm_chr4_96900860_96901926
Length = 1067
Score = 1029 bits (532), Expect = 0.0
Identities = 609/644 (94%), Gaps = 20/644 (3%)
Strand = Plus / Minus
Query: 41 gagtcaggcttgtatagtaataaaagtcagtgaaggttggtccgagattagagt-acagc 99
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 1067 gagtcaggcttgtatagtaataaaagtcagtgaaggttggtccgagattagagtga-agc 1009
Query: 100 cattgcttctgtttctgattttgtctaagatttgcaagatgtcactcagttaaagaacgg 159
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1008 cattgcttctgtttctgattttgtctaagatttgcaagatgtctctcagttaaagaacgg 949
Query: 160 tggccagcatataggat-gtcagagacacgtgggcaactctttttgctcttgtccataaa 218
||||||||||||||| | | ||| |||| |||||||||||||||||||||||||||||||
Sbjct: 948 tggccagcatatagg-tgggcagggacatgtgggcaactctttttgctcttgtccataaa 890
Query: 219 gctcaaagttttttg---ttttttgtttttt-------------ttgggtcagggcacac 262
||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 889 gctcaaagttttttgtttttttttgtttttttttttttttttcattgggtcagggcacac 830
Query: 263 agcaaacactctaggagactgtttcttctgttcttactgtcctctatgaatcagatatat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 agcaaacactctaggagactgtttcttctgttcttactgtcctctatgaatcagatatat 770
Query: 323 ttgacttaattttatagagagattttatgagagcttgattaagtgttcaaagaaacagcc 382
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 769 ttgacttaattttatagagtgattttatgagagcttgattaagtgttcaaaaaaacatcc 710
Query: 383 agtgagtttccaagacacaagttggagtctttggggatccaaatcctctgttcttaacaa 442
||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 709 agtgagtttccaagatacaagttcgagtctttggtgatccaaatcctctgttcttaacaa 650
Query: 443 gactatcacagagataatggcaaaatgataatcctaaaaataaataaaggtttaaatgga 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gactatcacagagataatggcaaaatgataatcctaaaaataaataaaggtttaaatgga 590
Query: 503 aatgtgagcagtaaattaaaatagagagattgagacttatggactaaaatttttgtgcac 562
||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 589 aatgtgagcagtaaattcaaataaagaggttgagacttatggactaaaatttttgtgcac 530
Query: 563 ataagactgtatggcagtgggatggaaagtagattctacagtgtagccaaggtgtgtgta 622
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 529 ataagactgtatggcagtgggatggaaagtagattctacagtgtagccaaagtgtgtgta 470
Query: 623 cactgtacaacaaatgggtaataactcttatttggctttcttca 666
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 469 cactgtacaacaaatgggtgataactcttatttggctttcttca 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_j09.g1 MSMg01no484_j09.g1 CHROMAT_FILE:
MSMg01no484_j09.g1 PHD_FILE: MSMg01no484_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:12 2005
(591 letters)
>mm_chr4_96754102_96755089
Length = 988
Score = 969 bits (501), Expect = 0.0
Identities = 569/593 (95%), Gaps = 7/593 (1%)
Strand = Plus / Plus
Query: 1 tatgattttctgaccctttggtttgcgttgattatcctgaatgaa-tttttcactgtttc 59
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||| | ||||
Sbjct: 201 tatgattttctgactctttggtttgcattgattatcctgaatgaattttttcaatatttc 260
Query: 60 tgaacttcacctgcccagtaagagtaacaatagctcatctactgaaagaaattggctact 119
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagcttcacctgtctagtaagagtaacaatagctcatctactgaaagaaattggctact 320
Query: 120 atgcattgtctttcaaactcccttcagatcttaggagttctctatgaaatattgtgagat 179
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 321 atgcattgtctttcaaactcccttcaggtcttaggagctctctatgaaatactgtgagat 380
Query: 180 cttattcttatttccatagagttgatagcagctctgtgaatattggaagaatgatggtag 239
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 c---ttgttatttccatagagttgatagcagctctgtgaatattggaagaatgatggtag 437
Query: 240 agaggtaggaaagataatggaaggaacagagttttaaaagtatcagcaaagacagagaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agaggtaggaaagataatggaaggaacagagttttaaaagtatcagcaaagacagagaaa 497
Query: 300 gctgtaaatactgatcaaagccaggactaacaggaatatttggctccctatcgttaaaga 359
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct: 498 gctgtaaatactgatcaaagacaggactaacaaaaatatttggctccctatcattaaaga 557
Query: 360 tgctttcaattacaaagcagaacaaaatgatggtaaaaactgaatcttacaagtccataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 tgctttcaattacaaagcagaacaaaatgatggtaaaaactgaatcttacaagtc-ataa 616
Query: 420 tatgtcagcttcagctctagtttgaaccagaggctcagggca-tcctgagcacctcagat 478
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 617 tatgtcagcttcagctctagtttgaaccagaggctcagggcaatc-tgagcacctcagat 675
Query: 479 tcttttctctctcttgcaccacagtgttatgtcacatgcagtcttgtttccaccatggac 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcttttctttctcttgcaccacagtgttatgtcacatgcagtcttgtttccaccatggac 735
Query: 539 ccctccatggtggagtcactttttatctacatgtattgcagtattcacaggaa 591
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 736 ccctccatggtggagtcactttttatctacatgtattgcagtagtcacaggaa 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 988
Length adjustment: 10
Effective length of query: 581
Effective length of database: 978
Effective search space: 568218
Effective search space used: 568218
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
