Query= MSMg01no484_l17.b1 MSMg01no484_l17.b1 CHROMAT_FILE:
MSMg01no484_l17.b1 PHD_FILE: MSMg01no484_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:24 2005
(238 letters)
>mm_chr4_124811535_124812175
Length = 641
Score = 427 bits (221), Expect = e-124
Identities = 232/237 (97%), Gaps = 3/237 (1%)
Strand = Plus / Minus
Query: 1 accctgctgcgtgcactcaggactcccacaattctccctgagcccttcagggcagtgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 accctgctgcgtgcactcaggactcccacaattctccctgagcccttcagggcagtgatt 353
Query: 61 ttgggtgatagcctcttacttgccttcaggcccacctctttttggaggttcaaacctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttgggtgatagcctcttacttgccttcaggcccacctctttttggaggttcaaacctctc 293
Query: 121 ccccacccc---cccacacaccccatgaaggctgttcactgctgtcaatgttaaggcctt 177
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 292 ccccaccccacccccccacaccccatgaaggctgttcactgctgtcaatgttaagggctt 233
Query: 178 cagtcttgctctccagccagaacttgctcttttggggtggggtggggtggggtgagg 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cagtcttgctctccagccagaacttgctcttttggggtggggtggggtggggtgagg 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 641
Length adjustment: 9
Effective length of query: 229
Effective length of database: 632
Effective search space: 144728
Effective search space used: 144728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no484_l17.g1 MSMg01no484_l17.g1 CHROMAT_FILE:
MSMg01no484_l17.g1 PHD_FILE: MSMg01no484_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:24 2005
(674 letters)
>mm_chr4_124599727_124600801
Length = 1075
Score = 1266 bits (655), Expect = 0.0
Identities = 670/675 (99%), Gaps = 1/675 (0%)
Strand = Plus / Plus
Query: 1 ctttccacctcccctctagtgcccacatgaatgtataaagacccaagcaccagaatctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttccacctcccctctagtgcccacatgaatgtataaagacccaagcaccagaatctct 260
Query: 61 ctcctctctctccaccccgcggagctccatgctagaattccatgtagcccagatatcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctctctctccaccccgcggagctccatgctagaattccatgtagcccagatatcctg 320
Query: 121 aaaagtccttaactcagcagggcaggcagctggcaggtgcacccctggcaccttaaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagtccttaactcagcagggcaggcagctggcaggtgcacccctggcaccttaaccag 380
Query: 181 ccactctgcctccagggtcctacagccactggacagcagctgcctgctccagagagcatt 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ccactctgcctccagggtcctacagccactgggcagcagctgcctgctccagagagcatt 440
Query: 241 gatcatctcttcttcctcatttcttaggccaaccgagcatacgtcgttcagagaactcac 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcatctcagcttcctcatttcttaggccaaccgagcatacgtcgttcagagaactcac 500
Query: 301 cccaaaataatccctacttttttttttt-cattgaacttcaggttatcctggctgggttc 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 cccaaaataatccctacttttttttttttcattgaacttcaggttatcctggctgggttc 560
Query: 360 cttgtcctcttccatttattctgagtagttttgaaatatcaccgcctcttaccgttgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtcctcttccatttattctgagtagttttgaaatatcaccgcctcttaccgttgcct 620
Query: 420 agctggcagaacggaaactcaagctcgggccactgggccatccattatctggtctctact 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctggcagaacagaaactcaagctcgggccactgggccatccattatctggtctctact 680
Query: 480 gtcctccatttctttcacagcttctatcccaggcaaaccaaacctcttactgttccttgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctccatttctttcacagcttctatcccaggcaaaccaaacctcttactgttccttgg 740
Query: 540 aaagattttccctcgcctgtcccaagctcttgtcccctacttaactagcgaagctcgctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagattttccctcgcctgtcccaagctcttgtcccctacttaactagcgaagctcgctc 800
Query: 600 tgaaaggaaggactggctgtgtgtgtcctaacgtttcccactccctcctcttcccagtgc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaaggaaggactggctgtgtgtgtcctaacgtttcccactccctcctcttcccagtgc 860
Query: 660 acttcccacttgtcc 674
|||||||||||||||
Sbjct: 861 acttcccacttgtcc 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
