NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATTTTTCCACACTTTTATCATGAATGGGTGTTGGATC
TTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGTGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTGCAACCCTATAG
GTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGC
TGCATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGC
CCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC
CAAAAAGGGGGAGTGGTGGTAAGGGGAAAATTGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGAGGTGGAACCAAGAATTAATTATT
TAAATCCTAAACATGGAGAGGGATTCAAGAAAGGCAATGGCAGAGTACTC
AGGGTCATTAGAAAACTGTCAAGTCTACCTCATGCAGAGCGGTTAGACAT
GCAGAGTCTCAGGCTCTTACCTGACTGGTAATTTATGATCACGATCCTTA
GATGGACAGTGTGTATGGTGCAGAGAGCTGGTTAATTACATATACTCTGA
AAGAAAGACACAGCTTTGAACTGTGGTTTCACTCTTGTTAGTGAAGGAAT
TGGCTGTACCACCCAATTTCAACATGTTAGTTTTTTTTTGTTTTTTTAAA
CATGGAGTCTAGAATGTTGGAAGTGTACCTGCCCAATGGATGTGAGTTTC
TAGTCTAGTGCCCCACATATAGTAGTGATCATGCCTACCTAAAATAGTTG
TGAAAGTCACTGTGCAAGAGAACGTAAGTGATAGAGAACTGATTTTTCAC
TGGCAATGCGGAATAGCAGCTGAGTGAAAACTCCATGACTATTTCTATGG
ATGGATCTTCCATGGCTATCATAAAACATTCAAGATTGGGTGACCTATTT
ATTAAATATTTTACTCAGTGTGTGGGAGGCTGAAAGTGCCACAGTGACTG
GCCACATCTGTTTGACCCCTGATGAGTGTTTTCTGTCTACAG

Query= MSMg01no484_n09.g1 MSMg01no484_n09.g1 CHROMAT_FILE:
MSMg01no484_n09.g1 PHD_FILE: MSMg01no484_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:33 2005
         (595 letters)



>mm_chr4_12381593_12382585
          Length = 993

 Score = 1019 bits (527), Expect = 0.0
 Identities = 571/595 (95%), Gaps = 17/595 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaggtggaaccaagaattaattatttaaatcctaaacatggagagggattcaagaaag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 216 ctgaggtggaaccaagaattaattatttaaattctaaacatggagagggattcaagaaag 275

                                                                       
Query: 61  gcaatggcagagtactcagggtcattagaaaactgtcaagtctacctcatgcagagcggt 120
           |||               ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gca---------------gggtcattagaaaactgtcaagtctacctcatgcagagcggt 320

                                                                       
Query: 121 tagacatgcagagtctcaggctcttacctgactggtaatttatgatcacgatccttagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacatgcagagtctcaggctcttacctgactggtaatttatgatcacgatccttagat 380

                                                                       
Query: 181 ggacagtgtgtatggtgcagagagctggttaattacatatactctgaaagaaagacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagtgtgtatggtgcagagagctggttaattacatatactctgaaagaaagacacag 440

                                                                       
Query: 241 ctttgaactgtggtttcactcttgttagtgaaggaattggctgtaccacccaatttcaac 300
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ctttgaattgtggtttcactcttgttagtgaaggaattggctgtaccatccaatttcaac 500

                                                                       
Query: 301 atgttagtttttttttgtttttttaaacatggagtctagaatgttggaagtgtacctgcc 360
           |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 atgttagtttttttgt-tttttttaaacatggagtctagaatgttggaagtgtgcctgcc 559

                                                                       
Query: 361 caatggatgtgagtttctagtctagtgccccacatatagtagtgatcatgcctacctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caatggatgtgagtttctagtctagtgccccacatatagtagtgatcatgcctacctaaa 619

                                                                       
Query: 421 atagttgtgaaagtcactgtgcaagagaacgtaagtgatagagaactgatttttcactgg 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 620 atagttgtgaaagtcactgtgcgagagaacgtaagtgatagagaactgatttt-cactgg 678

                                                                       
Query: 481 caatgcggaatagcagctgagtgaaaactccatgactatttctatggatggatcttccat 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 caatgtggaatagcagctgagtgaaaactccatgactatttctatggatggatcttccat 738

                                                                  
Query: 541 ggctatcataaaacattcaagattgggtgacctatttattaaatattttactcag 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggctatcataaaacattcaagattgggtgacctatttattaaatattttactcag 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 993
Length adjustment: 10
Effective length of query: 585
Effective length of database: 983
Effective search space:   575055
Effective search space used:   575055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)