BAC Information

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BAC

Clone NameMSMg01-485C11
Chromosome4 (Build37)
Map Location 138,551,068 - 138,551,720
singlet/doubletsinglet
Overlap geneTmco4
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186
Downstream geneHtr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485C11.T7 (MSMg01no485_c11.b1)MSMg01-485C11.TJ (MSMg01no485_c11.g1)
ACCAG564666AG564667
length724734
length of high quality
(start - end)		600 (55 - 654)653 (82 - 734)
definitionCHROMAT_FILE: MSMg01no485_c11.b1 PHD_FILE: MSMg01no485_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:59 2005CHROMAT_FILE: MSMg01no485_c11.g1 PHD_FILE: MSMg01no485_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TGCGCGGAATTCCTGGTTTTATCCAAATAATTTTAGAAAGAGATTTAAGG
AGGTGGTTTTAGTTGTTTTGCCAGAAAGATGTGATAAAGGTAGAGTCAAG
AACAGAATGTGCCCACTCCTCAGAAGGGTAAGTAAAGGCTGCATAATAAG
GAATACAGTGAGCTTTCACCATTACATTAAGAAGAGAAATAGGTTTGGGG
CACATTTGTGATCAAGGAAAAATGTCCTTTCTGGGTCAGATCACAGGATG
GAGCCACAGGTGTGCACTATGATGAATTCTGGCCGTGTAAACACGGTTCC
TTTGAACTTCCATGAGCTTACAGAATGAAGCACTGCTTTGAACTTGGTGA
TAGGCTTCTTCTGTAGCTCGCCTTTTGTGTAACATTTTATCTATGAGGGA
ATTCCTTCTTACCTAGAGAACTTTGTCTCTAACAGCTGTAAAGGACCAAA
AGCAATTTTAAAAAGGCGTGTAGCTGTTTCTGCTTCATCCAAGGTGTGTG
GGGGCTGTGCGAGTGACTTCTTTCCTTCCCTTTCCTTTCTTTTTTTCTTT
TTTTTTTTTTTCTTCTTCCTGGCCAGCGAGGGGCTCCTGGCTGACTCACC
AGAGAAAAGAGCTCTAGCAATAAATCCTTTTACTTAATCCCCTGCTGCTA
AACAGCATGTGTTAAGTCACCAGA

TTTTTGGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGGAAGCAGAGAAACG
GAAAAGGTTGAAGCCTACTAGTTCCAGCCGGCTCCCCACAGGGAAACTGG
CCAGACCAGGTTGGACTCCTGGCGATATTTAGAGCTTCCTCGTGGTGAAA
GAACCTGAGGAGCCCAGACCCTTACACAGCACAGCCCACCCATCCCATCC
CATTCCTTACAGCTTCTGAGGAGCAGAGAGGCCCGTAAGACCAGGGTATT
GCAGGGTGGGGTGGGAGCTATGGTCTAGATCTGGGCGATGCTGTCACCAG
AAGCTAGTCTAAAGTAGAGATCATTGGGACTTCCCTGGGAACCAGAACTT
ACAGATGGGAAGGAGGGAACAGAGCCGGGCAGAGGGTGGAGGGCAGCTGA
GCTGTTTGTCAACATCCTGAGGGACACCTAAGCTGACACTGCCATTGACC
CTGGGGGAAAGTTCTGAAAATGAGGTGCCCCGGTGGCTTCAAGTGGTGAC
TCTATGCCAGCTATCTTGGGGAGTCAGGTGACATCTTGGGAATGTGGTCC
TGTGTAGCTGGGGCGAGCCACAAAGGTTATAGACAGCGCAGGGCTGAGCT
GACAGCCCCTCCTTCATCCCTATAAGGAGAACAGAGTGCCACAGCAACTT
GGGAAAGTAGTTTGTCCTCATTGTCTGTGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_c11.g1 MSMg01no485_c11.g1 CHROMAT_FILE:
MSMg01no485_c11.g1 PHD_FILE: MSMg01no485_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:00 2005
         (653 letters)



>mm_chr4_138550868_138551920
          Length = 1053

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggaagcagagaaacggaaaaggttgaagcctactagttccagccggctccccacag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 853 attaggaagcagagaaacggaaaaggttgaagcctactggttccagccggctccccacag 794

                                                                       
Query: 61  ggaaactggccagaccaggttggactcctggcgatatttagagcttcctcgtggtgaaag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ggaaactggctagaccaggttggactcctggcgatatttagagcttcctcgtggtgaaag 734

                                                                       
Query: 121 aacctgaggagcccagacccttacacagcacagcccacccatcccatcccattccttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aacctgaggagcccagacccttacacagcacagcccacccatcccatcccattccttaca 674

                                                                       
Query: 181 gcttctgaggagcagagaggcccgtaagaccagggtattgcagggtggggtgggagctat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 673 gcttctgaggagcagagaggcccgtaagaccagggtattgcatggtggggtgggagctat 614

                                                                       
Query: 241 ggtctagatctgggcgatgctgtcaccagaagctagtctaaagtagagatcattgggact 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 613 ggtctagatctgggcgatgctgtcaccagaagctagtctgaagtagagatcattgggact 554

                                                                       
Query: 301 tccctgggaaccagaacttacagatgggaaggagggaacagagccgggcagagggtggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tccctgggaaccagaacttacagatgggaaggagggaacagagccgggcagagggtggag 494

                                                                       
Query: 361 ggcagctgagctgtttgtcaacatcctgagggacacctaagctgacactgccattgaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggcagctgagctgtttgtcaacatcctgagggacacctaagctgacactgccattgaccc 434

                                                                       
Query: 421 tgggggaaagttctgaaaatgaggtgccccggtggcttcaagtggtgactctatgccagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgggggaaagttctgaaaatgaggtgccccggtggcttcaagtggtgactctatgccagc 374

                                                                       
Query: 481 tatcttggggagtcaggtgacatcttgggaatgtggtcctgtgtagctggggcgagccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatcttggggagtcaggtgacatcttgggaatgtggtcctgtgtagctggggcgagccac 314

                                                                       
Query: 541 aaaggttatagacagcgcagggctgagctgacagcccctccttcatccctataaggagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaggttatagacagcgcagggctgagctgacagcccctccttcatccctataaggagaa 254

                                                                
Query: 601 cagagtgccacagcaacttgggaaagtagtttgtcctcattgtctgtgcctct 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagagtgccacagcaacttgggaaagtagtttgtcctcattgtctgtgcctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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