BAC Information

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BAC

Clone NameMSMg01-485E14
Chromosome4 (Build37)
Map Location 50,432,420 - 50,432,742
singlet/doubletsinglet
Overlap genenone
Upstream geneRbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485E14.T7 (MSMg01no485_e14.b1)MSMg01-485E14.TJ (MSMg01no485_e14.g1)
ACCAG564767AG564768
length727734
length of high quality
(start - end)
576 (52 - 627)523 (80 - 602)
definitionCHROMAT_FILE: MSMg01no485_e14.b1 PHD_FILE: MSMg01no485_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:10 2005CHROMAT_FILE: MSMg01no485_e14.g1 PHD_FILE: MSMg01no485_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGTTTTCCTCTGTTTCCCAGTTTTTAATTGTTATTTA
GTTTGCTAGAGTTTAACTTCTTGAGGTCTTTATATATTTTGTAAATTTAG
TCCTGTGTCAAATGTAGGGTTAGTGAAGATCCTAATCTGTAGGCTGCATT
TTGTCCTGTTGATAGTGTCATTTGCCTAAAGAAGTTTTCCAATCATTGGG
TCCTATTTATTAATTGTTGATGTTAGTGCCTGAGCTACTGGTGTTCTTTT
CAGGAATCTGTCTCCTGTACCAATGTGTTCAAGACTATTTCCTACTTTCT
CTTCTATTAGATTCAGTGTATCAGGTTTTATGTTGGGTTCCTTGATCCAC
TTAGATTTGAGTTTTGAACAGGGCAATAAATATGAATCTATTTGTAATCT
TCTACATGCAGACACACAGAGTCGTACCATTTATTGAAGATGATATCTCT
TTTCCATTGTATGGGTTTGGCTTCTTTATCAAAATCAAATATTCACAGGT
GTTTGTATTTGTGTGTGTGCGTGTATGTGCGCGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTTTATTTCTGGGTCTTTGATTCTATTCCA
TTGATCAACCTGTCTGTTTCTGTATGAGTACCGTACAAGTAATTATTTAA
TTATTTACTAATTTCTTATTTACTTGT
NTTCGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATATTAAGACAGGGAGA
TCTCTGAGTTCAAAGTAATCTGGGATTAAAGGCACAGTGGCACACACCTT
TAATCTGGACCACACCTTCTGCTGAAGACCTACATAAAGACATTGGAAGA
AAGAAGATTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTATGTATCTATCTATCTCTTCTACGCCTGCT
TGCCTTGCAGGCAACTGTGAGATTTTTGGACTTCCATTCACAGCTGCTGC
TGACCATTGTTGGGAGTTGGACTGCAGACTGTAAGGCATCAACAAATTCC
ATTACTATACAGAGACTACCCATAAGTTCAGTGACTCTAGAGAACCCTGA
CTAATACACGACTATATTCTGTAGGAGAGAAAGGTGCTCACTGCTTCACT
GCTAGCTTTTTGAACTATGTTTTTTTTTGTGATTTCTTTTCCTTTATCTT
ATAACTCTTTTCCATTTTTAAAATATGAAACTGACCAGATAGAAGAGAGT
TAGCAAAGTCAGTAATATTTCTGTCCCACTTTCCTGATCTTTCTTATAGC
TATCAGGTAACATTCCAATCTTCTTTTTCCAATCCATATACATTTTACAG
TGCTTAAATAATATTTTTAAAGTGAATCTGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_e14.g1 MSMg01no485_e14.g1 CHROMAT_FILE:
MSMg01no485_e14.g1 PHD_FILE: MSMg01no485_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:11 2005
         (523 letters)



>mm_chr4_50431841_50432762
          Length = 922

 Score =  518 bits (268), Expect = e-151
 Identities = 310/324 (95%), Gaps = 1/324 (0%)
 Strand = Plus / Minus

                                                                       
Query: 200 atctatctcttctacgcctgcttgccttgcaggcaactgtgagatttttggacttccatt 259
           |||| |||||||||||| |||||||||||  ||||||||||||||  |||||||||||||
Sbjct: 902 atctctctcttctacgcatgcttgccttgtgggcaactgtgagatcattggacttccatt 843

                                                                       
Query: 260 cacagctgctgctgaccattgttgggagttggactgcagactgtaaggcatcaacaaatt 319
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 842 cacagctgctgctgaccattgttgggagttggactacagactgtaaggcatcagcaaatt 783

                                                                       
Query: 320 ccattactatacagagactacccataagttcagtgactctagagaaccctgactaataca 379
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 782 ccattactatacagagactacccataagttcagtgactctagaaaaccctgactaataca 723

                                                                       
Query: 380 cgactatattctgtaggagagaaaggtgctcactgcttcactgctagctttttgaactat 439
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cgactatattctgtaagagagaaaggtgctcactgcttcactgctagctttttgaactat 663

                                                                       
Query: 440 gtttttttttgtgatttcttttcctttatcttataactcttttccatttttaaaatatga 499
           || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtctttttt-gagatttcttttcctttatcttataactcttttccatttttaaaatatga 604

                                   
Query: 500 aactgaccagatagaagagagtta 523
           ||||||| ||||||||||||||||
Sbjct: 603 aactgacaagatagaagagagtta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space:   467856
Effective search space used:   467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)