Query= MSMg01no485_n02.b1 MSMg01no485_n02.b1 CHROMAT_FILE:
MSMg01no485_n02.b1 PHD_FILE: MSMg01no485_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:55 2005
(607 letters)
>mm_chr4_111006533_111007539
Length = 1007
Score = 1064 bits (550), Expect = 0.0
Identities = 594/616 (96%), Gaps = 12/616 (1%)
Strand = Plus / Plus
Query: 4 ggaattcccaattatatgaatcaaatttgctgtataatgagcactgttctctagtccagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ggaattcccaattatatgaatcaaatttgctgtataatgagcactgttctctagtccagg 251
Query: 64 aaatctcttctaacaacagaatgtatgagttttcctttatccaactcttcaacactcaga 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 aaatctcttctaacaacagaatgtatgagtttccctttatccaactcttcaacactcaga 311
Query: 124 tctgtaggacacaattttgccagtccacaatgatgaacagaaaattgtgtcccagtaagg 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 312 tctgtaggacacaattttgccagtccgcaatgatgaacagaaaattgtgtcccagtaagg 371
Query: 184 ctatcctataaatccctgggtgctggtcgagcagattatcattttgttctcccattgcta 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 372 ctatcctataaatccctgggtgctggtcgagtagattatcattttgttctcccattgcta 431
Query: 244 ctttgaattctttatgacttatcacatcctttgagtacagactattgggttagctctgtc 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttgaattctttataacttatcacatcctttgagtacagactattgggttagctctgtc 491
Query: 304 ttactgattcacaattcattactct------------tatattttctgcaaatgtcccag 351
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 492 ttactgattcacaattcattactctgaatatatcccttatattttctgcaaatgtcccag 551
Query: 352 aatgtgacttgtacttttttatggctgcttttgtatgtgatatgttttcatatgtggagg 411
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaggtgacttgtacttttttatggctgcttttgtatgtgatatgttttcatatgtggagg 611
Query: 412 gactttgtaaatttaatgtggagtttatcaatctcttgctttaagagctattttgtaact 471
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gactttgtaaatttaatgttgagtttatcaatctcttgctttaagagctattttgtaact 671
Query: 472 tcaatccttttcagcatgactataccttttcctaaaccaggtgtaatggtgtgcgtctgt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 672 tcaatccttttcagcatgactataccttttcctaaaccaggtgtaatggtgtgtgtctgt 731
Query: 532 aaccctatcattttgaggctgggctaggaggttggggtggaaggattacctgagactcaa 591
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct: 732 aaccctatcattttgaggctggggtaggaggttggggtgggaggattacctgagattcaa 791
Query: 592 agccagtctaagatac 607
||||||||||||||||
Sbjct: 792 agccagtctaagatac 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_n02.g1 MSMg01no485_n02.g1 CHROMAT_FILE:
MSMg01no485_n02.g1 PHD_FILE: MSMg01no485_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:55 2005
(624 letters)
>mm_chr4_111146977_111148000
Length = 1024
Score = 1160 bits (600), Expect = 0.0
Identities = 618/624 (99%)
Strand = Plus / Minus
Query: 1 actaaagtgagcagtgatagatccacaaggtcccagaaaagacacacttgggtcagcctg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 824 actaaagtgagcagtgatagatccacaaagtcccagaaaagacacacttgggtcagcctg 765
Query: 61 ggactcagcatttccagacagggtgtttcccacaggaagaatactcatgtaagggtactg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggactcagcatttccagacaaggtgtttcccacaggaagaatactcatgtaagggtactg 705
Query: 121 aaggagggcaagcaactctcagagacagccatgctgcaaacaggaggactgtggaagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaggagggcaagcaactctcagagacagccatgctgcaaacaggaggactgtggaagaac 645
Query: 181 gttcgaatgttctggacagcagctggggcttcaggggattcattcatcatggaaaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttcgaatgttctggacagcagctggggcttcaggggattcattcatcatggaaaggttg 585
Query: 241 gagagagtgagggttggctgggtcctagtgtcagctgatcagcccccagctctgcttagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gagagagtgagggttggctgggtcctagtgtcagctgatcagcccccagctctgcttagg 525
Query: 301 agagactggagcctaaggggcccaggatgagaagaacaaggtttttctagagaccaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agagactggagcctaaggggcccaggatgagaagaacaaggtttttctagagaccaagct 465
Query: 361 ctggtagtctgcatatgagctagatgaggacaacactggagggctccctagcatcaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctggtagtctgcatatgagctagatgaggacaacactggagggctccctagcatcaggag 405
Query: 421 cctcaaccatgtcaagggcttgcggaaatgtgagctgtaagaccctgtgcccatcctaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 404 cctcaaccatgtcaagggcttgcggaaatgtgagctgtaagaccctgtgcccatccttac 345
Query: 481 atagggcctgcctgtgtggcagtatttcctaggatctgagcagcctcttcagtgcaccga 540
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atagggcctgcctgggcggcagtatttcctaggatctgagcagcctcttcagtgcaccga 285
Query: 541 gcttgctcaggtccctgcataactggctgtttaacccagcatgttaggacagatgtcatt 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gcttgctcaggtccctgcacaactggctgtttaacccagcatgttaggacagatgtcatt 225
Query: 601 gcggtgactggatcacagctgagc 624
||||||||||||||||||||||||
Sbjct: 224 gcggtgactggatcacagctgagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
