NGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAGAATAACAAATGTGGATTCACAGACGTCAAATATTCCA
CAAACTGACCTAGTTAGCTTTCAAAAATATTTGTCAAATAGTAATGTGAG
GCATACAATTTCAGCACCACTGTTATGCTCCCTTCCACAAAAAAAAAAAA
AATGTTAGGCATTGCTGGCTAACCTTTTAAAATGTTTTTATATATCACTG
GAGAATGCATTGTGCCTTTTAGAATAATCAGAGATGGTTTTAGAAAAAGC
AAGCTGAAGTTATTGGATGATTTTGTTGGGGATTTTGGACACTCAAAGTT
AAATAATTGAATAAGACTTGATAATCTCCAGAAAGCAAGAAGAATGTAAA
CAAGCCAGAGATGGGGTCAGCTTGTGTTATGAGTAGGACATTCTCCTTCC
TTCTGGTGTCTCGCTTTTTCCTCTTCTCTCCCTCCAAAGTGGAAACACGA
AACAGCTTGATGTCTACCTGTTTAACCCAGAGGGATAAAACAAACTGAAG
GTAGTGTGTGACATCATTAATGGATGAGCAACTGGGAAAGTCTATGGTGG
GATTTGTGAGTTTACTTCTGGCCCTTAGAAATCCTGAANGGTCATTTAAC
CTAATAAAGCCTTCTGTTTATAAACAAGTTTTTCTATTTGATGTCCTGAA
TCTGAAGTAGGCAAGCATGGGACCAGAAACTGAC

TTTCTATGGTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTAATCAGCGTATATTTTGG
CCTTCTGATATTCTGTGATATAATAAGCGCTATTAAATTGGGAATTACGA
CGTCTATATGGGTATGTATCAAAGATGCTGGATAGAGGCTAAATCATGAA
GCTACCAAATGACCTCTGCCAGCGGGACTGTTACACGCTCTCTGTCTATA
GACAGTTTGAATTTTCACCTTTAGGTCCAGCTTTGCAAATTTTCCTGAGT
TCTGCACAGGAACATATTCGTGTTTGTTCTTTCTCTTTGGTATACTCAAG
ACAACACATCGTAGCCTTCATTTACAGTCACGAAGATACATTTGATGTTG
GTTCAGTGAGCTTCATCTCACGCCCAGTACTTGGGACAATGGGGAACACT
TATCGTCACAGTCTCTAATACATACATATTGTCAATATTTCTAACATGCA
TTCCAGATTGCTACCCATTCATTTTTATGGTTTTTTGTTTTGTTTGAAAA
GTTTGTAAACCCCGAAGAATATTTCTTTCCTTTCATCCCCCCTTTGAAAT
GCTTAATTTCCCCATTCGGCTAATGGTAACACTGGGGTTACTGAAATTCC
CGAATACCCTGAATATTTTCTACACTTTCACATCTGTTTCGAAGTCGAGT
CTATCCGTTAAAGCCCAAAATTATTTTTCTTTTCTGTGTCTGCTCAGTCT
TTAAAGTGTCATCTGTTGTGCCCAAAACAGTC

Query= MSMg01no485_n12.b1 MSMg01no485_n12.b1 CHROMAT_FILE:
MSMg01no485_n12.b1 PHD_FILE: MSMg01no485_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:57 2005
         (591 letters)



>mm_chr4_13428702_13429690
          Length = 989

 Score = 1079 bits (558), Expect = 0.0
 Identities = 582/591 (98%), Gaps = 2/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggattcacagacgtcaaatattccacaaactgacctagttagctttcaaaaatatt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atgtggattcacagacgtcaaatattccacaaactgatctagttagctttcaaaaatatt 260

                                                                       
Query: 61  tgtcaaatagtaatgtgaggcatacaatttcagcaccactgttatgctcccttccacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaatagtaatgtgaggcatacaatttcagcaccactgttatgctcccttccacaaa 320

                                                                       
Query: 121 aaaaaaaaaaatgttaggcattgctggctaaccttttaaaatgtttttatatatcactgg 180
           ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaaaa--gttaggcattgctggataaccttttaaaatgtttttatatatcactgg 378

                                                                       
Query: 181 agaatgcattgtgccttttagaataatcagagatggttttagaaaaagcaagctgaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaatgcattgtgccttttagaataatcagagatggttttagaaaaagcaagctgaagtt 438

                                                                       
Query: 241 attggatgattttgttggggattttggacactcaaagttaaataattgaataagacttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attggatgattttgttggggattttggacactcaaagttaaataattgaataagacttga 498

                                                                       
Query: 301 taatctccagaaagcaagaagaatgtaaacaagccagagatggggtcagcttgtgttatg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 taatctccagaaagcaagaagaatgtaaacaagccagagatggggtcagcgtgtgttatg 558

                                                                       
Query: 361 agtaggacattctccttccttctggtgtctcgctttttcctcttctctccctccaaagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agtaggacattctccttccttctggtgtctcgctttttcctcttctctccctccaaagtg 618

                                                                       
Query: 421 gaaacacgaaacagcttgatgtctacctgtttaacccagagggataaaacaaactgaagg 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 gaaacacaaaacagcttgatgtctacctgtttaacccagagggataaaacaaattgaagg 678

                                                                       
Query: 481 tagtgtgtgacatcattaatggatgagcaactgggaaagtctatggtgggatttgtgagt 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 tagtgtgtgacatcattaatggatgagcaactggaaaagtctatggtgggatttgtgagt 738

                                                              
Query: 541 ttacttctggcccttagaaatcctgaanggtcatttaacctaataaagcct 591
           ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 739 ttacttctggcccttagaaatcctgaagggtcatttaacctaataaagcct 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 989
Length adjustment: 10
Effective length of query: 581
Effective length of database: 979
Effective search space:   568799
Effective search space used:   568799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)