Query= MSMg01no486_b17.b1 MSMg01no486_b17.b1 CHROMAT_FILE:
MSMg01no486_b17.b1 PHD_FILE: MSMg01no486_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:18 2005
(607 letters)
>mm_chr4_128858211_128859216
Length = 1006
Score = 1067 bits (552), Expect = 0.0
Identities = 586/608 (96%), Gaps = 19/608 (3%)
Strand = Plus / Minus
Query: 5 ggcttacaaccatctgtaatgggatccagtgctctcttctggtgtgtctaaacacagcta 64
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 597 ggcttacaaccatctgtaatgggatcca-------------gtgtgtctaaacacagcta 551
Query: 65 cagtgtactcatatacataaaataaataaataaatctcttttaaaaagtaaatatataaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 550 cagtgtactcatatacataaaataaataaataaatctcttttaaaaagtaaacatataaa 491
Query: 125 aaccccctgtggccatcatatattccacaatgataattttgtttgcggttagcagaattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaccccctgtggccatcatatattccacaatgataattttgtttgcggttagcagaattt 431
Query: 185 gtgttcaaatgaattagggtttgaatcctgattgacaccattacttttcgtttttcaacc 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 430 gtgttcaaatgaattagggtttgaatcctgattgacaccattac-tttcgtttttcaacc 372
Query: 245 tttgatgcttcttcaaacttctttttcttttatcttttgatttgtggtttgtttgttt-- 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 tttgatgcttcttcaaacttctttttcttttatcttttgatttgtggtttgttttttttt 312
Query: 303 ---tttctttcctagatagagtttttctgtgtagtccctgctgtcctggaactcactctg 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 311 ttctttctttcctagatagagtttttctgtttagtccctgctgtcctggaactcactctg 252
Query: 360 tagaccaggctggcctcaaactcagagaaacttacctctgcctcctgagtgctggtatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tagaccaggctggcctcaaactcagagaaacttacctctgcctcctgagtgctggtatta 192
Query: 420 aagtgtcaccaccacacccagcaaacttctttctttttttgataataaggattaagccta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aagtgtcaccaccacacccagcaaacttctttctttttttgataataaggattaagccta 132
Query: 480 gtgtattgtacatgctaatcatatactgtactgctaagctgtacccatccacctgataat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtgtattgtacatgctaatcatatactgtactgctaagctgtacccatccacctgataat 72
Query: 540 ctttactataaattgagtaaatgttactgtatgttacagcaagaattaatgaaatatgtg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ctttactataaattgagtaaatgttactgtatgttacagcaagaattaatgaaatatgtg 12
Query: 600 tataaaaa 607
||||||||
Sbjct: 11 tataaaaa 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_b17.g1 MSMg01no486_b17.g1 CHROMAT_FILE:
MSMg01no486_b17.g1 PHD_FILE: MSMg01no486_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:19 2005
(397 letters)
>mm_chr4_128726485_128727283
Length = 799
Score = 752 bits (389), Expect = 0.0
Identities = 393/395 (99%), Gaps = 2/395 (0%)
Strand = Plus / Plus
Query: 5 gaggtctgcccccctcaagccccacgcaaccagatcgaccctcatcttccatgtctgctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaggtctgcccccctcaagccccacgcaaccagatcgaccctcatcttccatgtctgctc 264
Query: 65 ttgcgtcttgggcagaaaccggag--ctagcgccactgctgctcgggtgaaatctgtatg 122
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgcgtcttgggcagaaaccggagagctagcgccactgctgctcgggtgaaatctgtatg 324
Query: 123 attaaaaagcctgttacatttattacgaaatatttaactctcgtttttattcaacgcatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaaaaagcctgttacatttattacgaaatatttaactctcgtttttattcaacgcatt 384
Query: 183 aaatatttaagtcactagcttccctcctttgcgttcattctgacttgtaattacggttat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatatttaagtcactagcttccctcctttgcgttcattctgacttgtaattacggttat 444
Query: 243 ttgtgtggctgttgctaaccgggcttctgcttggaatgtaagttccacgaaggggggagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtgtggctgttgctaaccgggcttctgcttggaatgtaagttccacgaaggggggagg 504
Query: 303 ggcgtgtgttttatctatccttgtaacagcagcacactgcgggtgtaggaggctttatat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcgtgtgttttatctatccttgtaacagcagcacactgcgggtgtaggaggctttatat 564
Query: 363 tttctcctctctctggagatgtaacaatgaaccaa 397
|||||||||||||||||||||||||||||||||||
Sbjct: 565 tttctcctctctctggagatgtaacaatgaaccaa 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 799
Length adjustment: 9
Effective length of query: 388
Effective length of database: 790
Effective search space: 306520
Effective search space used: 306520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
