NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATTTTCAAGACTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGAAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTGATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTAAAGCTTTANGTCAGGCATGGTGATTCCACCAGAGGTTCTT
TTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTN

GCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTACATTTGCGTCTTTCAATACAA
TACTTGGTCTGTCTCAGCTTCCACTGATAGAGTGCCTTACTGAAGCTCAC
ATGAAATTTCAATTCACTGTTACATTTGTTAGGTACATACTGTGTGCCAG
GTGTTATGATAGACACCAAAAGATAAGTCAAAATTTGTTCACTATCTACT
TGAACACACACAAGGAGACAGCTCAGAGTGATGGGTTCTCAGATGTGTGA
CCATCTTTTCTGCCCCTCTTTCTTGTAAACCTTCCCAGGTTATCGAAACA
TCCTATATTCTAGCTTTTACATGTTCACTTTCTCATGATAGTCCCTTCAC
TGAAAATAGAGGCCCATTGGACTTGCAAACTATATATGCCCCAGTACAGG
GGAATGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGGAN
NNNNNTTTTTNTTTTTTTTTTTTTTNTNTTTTNNTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTNTTTTNTTTTTTTTTTTTNNCCTTTTTTTTTTT
TTTTTTTTTNTTTNNTTTNTTTTTTTNTTTTTTTTGTTCTNNTTTTTTTN
TNTTTTTTTTTTTTTNNNTTNTNNTTTTTTTTTTTNTGTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTNNTTTTTTTTTGTN

Query= MSMg01no486_g01.g1 MSMg01no486_g01.g1 CHROMAT_FILE:
MSMg01no486_g01.g1 PHD_FILE: MSMg01no486_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:40 2005
         (428 letters)



>mm_chr4_69457959_69458785
          Length = 827

 Score =  799 bits (413), Expect = 0.0
 Identities = 422/425 (99%), Gaps = 1/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattacatttgcgtctttcaatacaatacttggtctgtctcagcttccactgatagagtg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cattacatttgcgtctttcaatacaatactcggtctgtctcagcttccactgatagagtg 260

                                                                       
Query: 61  ccttactgaagctcacatgaaatttcaattcactgttacatttgttaggtacatactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttactgaagctcacatgaaatttcaattcactgttacatttgttaggtacatactgtg 320

                                                                       
Query: 121 tgccaggtgttatgatagacaccaaaagataagtcaaaatttgttcactatctacttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccaggtgttatgatagacaccaaaagataagtcaaaatttgttcactatctacttgaa 380

                                                                       
Query: 181 cacacacaaggagacagctcagagtgatgggttctcagatgtgtgaccatcttttctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacaaggagacagctcagagtgatgggttctcagatgtgtgaccatcttttctgcc 440

                                                                       
Query: 241 cctctttcttgtaaaccttcccaggttatcgaaacatcctatattctagcttttacatgt 300
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cctctttcttg-aaaccttcccaggttatcgaaatatcctatattctagcttttacatgt 499

                                                                       
Query: 301 tcactttctcatgatagtcccttcactgaaaatagaggcccattggacttgcaaactata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcactttctcatgatagtcccttcactgaaaatagaggcccattggacttgcaaactata 559

                                                                       
Query: 361 tatgccccagtacaggggaatgccagggccaaaaagtgggagtgggtgggtaggggagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgccccagtacaggggaatgccagggccaaaaagtgggagtgggtgggtaggggagtg 619

                
Query: 421 gggga 425
           |||||
Sbjct: 620 gggga 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space:   342742
Effective search space used:   342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)