BAC Information

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BAC

Clone NameMSMg01-486I09
Chromosome4 (Build37)
Map Location 151,687,394 - 151,687,873
singlet/doubletsinglet
Overlap geneRnf207
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt
Downstream geneRpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833, LOC100042089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486I09.T7 (MSMg01no486_i09.b1)MSMg01-486I09.TJ (MSMg01no486_i09.g1)
ACCAG565707AG565708
length734748
length of high quality
(start - end)		480 (79 - 558)---
definitionCHROMAT_FILE: MSMg01no486_i09.b1 PHD_FILE: MSMg01no486_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:51 2005CHROMAT_FILE: MSMg01no486_i09.g1 PHD_FILE: MSMg01no486_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGCCTATAATTGCGGCGCTAAACGACTCACATAGGTCGAGGATGGGC
GGAATTCTGCGCGGGGTCCCCTGGCGATCTGGACCGGGGATTGAGTCATG
AGCGGCTCTTCTAACCCGGTGTCTCCCGTCCCAATCCCCGACCGGGCGCC
TGCGCACCTTGCTGCTCTGAGCCGGTCTTAGGCGATGCGGCCGCGTGACG
ATGCCTTGAAGTCTCTCCATCAGCTCCTGTCACAGGGAAAGAGCTCAGAA
CGAGGGTGTGTGGCAAGGAGGTGGCAGCCAGGGTGGGAGAGAGAAGTGGA
GGACTTGAAGGCACTGGAGCTAGTCTAGCGGACGTTTGACCTCGTCTCCC
TTAGAAGTTCCAACCCTCCTCTAGGACTGTCCAGAACCAGGCACGCCCAC
ATCTGTAGGAGGGGAGGTGGAGCGCCCGCAGACAGACGCTGCAGTTTGGC
GAAACAGAGGCTTATGAGGCTTATTATGCTCACTGCCCTTTTAAAAGGGA
TTCACCTGGTCTGAAAAAGGCTCATAGTGAAAGGGAAGAGAAGCCCAGAG
ATCCCAAGTTAGCCTGCGGGCGAAATGAGACACGCAGCCTCTATGCAGGG
CAGACTCTACAGTGAGGAAAGGGGCGGGTGTGTGTTGTGTGTGGGGGGTG
CCCCGCCAGAGTTGTAGAACCTCACATAACCCAAATCCAGAAACTCACTT
TTGCTGGCCAAGCTGAAGTACGGATAACCCATGA

CATGATGTTGGAGCCGGGGGCGCCTGATCGAACCAGGGGGGAANNANNGA
ATTCCTAAACAGAGGANNNGAGGAAANNGAACGGAGAGAACACCTGAAAT
ATTGTTCCCATCCTCAATCATCACGGAAACGCAAATCATATAAACCCTGA
GATTCCACCCCACATCATTCATAATGGTTAATACCAAAAATTCCGGTGAC
TGCAGATGCTGGCCTGTATGTGGACAAAGAGGAACTTTCCTCCATCGTCG
GTGGGATTGCAGGCTTGTTAAATCACTCTGGAAATCAGCCTGGCAGTTCC
TCTTTTTTTTGGACATAGTACCACCTTAGGATCCAGCATTATTTCTCCTG
GGCATTATATCCAGAATATGCCCCATCTGGTAAGATAGACACTTGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCCGAAGTTGGAAAGAATTC
TTACGCCCTTCACTCGAGGAATGGATCCCCAAAATGCCGTACATCTACAC
CATGGTGTACCACTCAACCATTAAAAAGAATGAATCCATGAACCCCCTAT
CATATCGGATGTACTTCGGAAGGCCCCCCTTAATTCCGTAATAGTTCTAT
CGACCCTGAAAAGGCTTTGCCGGACCTTTGTGCGCCCCATTTTTTTTATT
ACCACCACAGCTCATCCTTTTCCATATCTCACCTACTCCGCTACTCCCTA
TAGCTGGTTCACCATTGGTGCCCCTGTTCCCCCCTTATTCCCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_i09.b1 MSMg01no486_i09.b1 CHROMAT_FILE:
MSMg01no486_i09.b1 PHD_FILE: MSMg01no486_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:51 2005
         (480 letters)



>mm_chr4_151687194_151688073
          Length = 880

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaccggggattgagtcatgagcggctcttctaacccggtgtctcccgtcccaatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaccggggattgagtcatgagcggctcttctaacccggtgtctcccgtcccaatccc 260

                                                                       
Query: 61  cgaccgggcgcctgcgcaccttgctgctctgagccggtcttaggcgatgcggccgcgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaccgggcgcctgcgcaccttgctgctctgagccggtcttaggcgatgcggccgcgtga 320

                                                                       
Query: 121 cgatgccttgaagtctctccatcagctcctgtcacagggaaagagctcagaacgagggtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cgatgccttgaagtctctccatcagctcctgtcacagggaaagagctcagaacgaggggg 380

                                                                       
Query: 181 tgtggcaaggaggtggcagccagggtgggagagagaagtggaggacttgaaggcactgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggcaaggaggtggcagccagggtgggagagagaagtggaggacttgaaggcactgga 440

                                                                       
Query: 241 gctagtctagcggacgtttgacctcgtctcccttagaagttccaaccctcctctaggact 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gctagtctagcggacgtttgacctcgtctcccttagaagtgccaaccctcctctaggact 500

                                                                       
Query: 301 gtccagaaccaggcacgcccacatctgtaggaggggaggtggagcgcccgcagacagacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccagaaccaggcacgcccacatctgtaggaggggaggtggagcgcccgcagacagacg 560

                                                                       
Query: 361 ctgcagtttggcgaaacagaggcttatgaggcttattatgctcactgcccttttaaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcagtttggcgaaacagaggcttatgaggcttattatgctcactgcccttttaaaagg 620

                                                                       
Query: 421 gattcacctggtctgaaaaaggctcatagtgaaagggaagagaagcccagagatcccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattcacctggtctgaaaaaggctcatagtgaaagggaagagaagcccagagatcccaag 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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