BAC Information

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BAC

Clone NameMSMg01-487A02
Chromosome4 (Build37)
Map Location 54,475,042 - 54,475,695
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487A02.T7 (MSMg01no487_a02.b1)MSMg01-487A02.TJ (MSMg01no487_a02.g1)
ACCAG566074AG566075
length727747
length of high quality
(start - end)		655 (73 - 727)669 (79 - 747)
definitionCHROMAT_FILE: MSMg01no487_a02.b1 PHD_FILE: MSMg01no487_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:29 2005CHROMAT_FILE: MSMg01no487_a02.g1 PHD_FILE: MSMg01no487_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCTAATCTTGAACAAGTAATTGAGACT
CTTAGAGCATGGGTTACATGAGGCTGATTGTGGTAGCTTTGCATGGCTGT
TATAAGTGTTGAGCAAGGTAATGACTGTGAAGCACTGAGTGTTTGTGTGA
ATATTTTGGTGGTGTTTCTCTCATCTCACTCCTCTTCCTGAGCCCCCATT
GGCCCAGTTCATGCATTTCTATGGGGCTGCTAGCATTAAGGAAATGAAAG
AATTTTCACCTGATGTTTGAGATTTGAATACCTGCCTCTTGGCAAAGTAG
AAATCACTCAAAAGGGTACGAGTATGAATCTATGTAAGCCTCTCTTCTAC
TTTTTTGAATCCAAAGTGGAATCCCTAGGCTGAAATGAAGAGATCACTGA
GGAGAAAAGTAGATCTAAGAGACATAGTTGGCAGATGCCTAGAAAAACGC
ACCCCATAATATCACTGGACTTTTATGCATTGAGGGTTGGCTATGGAAGA
AATTATGTATACCCCAGACTTATCTGCAGAATAGAAGAGAAAAATAAATG
GGCAATTTGTTCAAAGTTGATGGGAGGGACTGGAAAAGGCAACGGAAACA
GAAGCTATGATGCTTCTGTGTCTCTAGTACACAAGGCTGGCAAAACCACA
GAAATTATCCCACAGAATGCTGCAGAC

NCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAACAGGTTCGTCGGTGG
TGGGCATGTCTGGGGGTCATTTTCTTAATTTCTAATTGACGTAAGGTCCT
GTGGATTGAAGGTGTCATGGAAAGAGACTGTTGTTAGCAACATCCCTAGG
CAGGTGTGCCTGGGCTTCATAGAAGGGCAGCAGAGTGTGAGTCCGGGAGC
AAGCCGATAAGTAGGGCTCCTTGGAAGTTTCTACCTTGCATGCTTGCCTT
TTGTTCCTGCCTGTCCTCCCAATGATGGAGTGTAGCAAGTAAGATGATCG
TTTTTTTCTCCTTCCCCCATGCTGATTAGCTTTATATCAATTTGACAAGA
GTTAGGGTTTTTTTGTATTGGTGGAGACTCAGTTGAGAAAATGGCCCCAT
CAGATTGGCCCTGAGTGTAAGCCCATGGGGCGTTTTTCTTGCTTGATGAT
GGATGTGGGACAGCCCACCGCTGTGGCTTGTACAACCGCTGGGTAGGTGG
GCTTTTTAAAAAGCATGCTGAGCAAGGCACTGGCAGTAAGCCAGCCAGCA
AGCAGCATTCCTCCATGGCTTCTGCTTCAGTTCTTGACTCTGGGGTACTG
CCTTAAGTTCCTGCCCTGGACTCACTGTAAGGTTTAAAATAAAATAAACC
CTTTCTCCCACAACTTGCTTTGGTCGTAGTTTTTATTGAAGCAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_a02.b1 MSMg01no487_a02.b1 CHROMAT_FILE:
MSMg01no487_a02.b1 PHD_FILE: MSMg01no487_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:29 2005
         (655 letters)



>mm_chr4_54474841_54475895
          Length = 1055

 Score = 1265 bits (654), Expect = 0.0
 Identities = 654/654 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctaatcttgaacaagtaattgagactcttagagcatgggttacatgaggctgattgtgg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tctaatcttgaacaagtaattgagactcttagagcatgggttacatgaggctgattgtgg 796

                                                                       
Query: 62  tagctttgcatggctgttataagtgttgagcaaggtaatgactgtgaagcactgagtgtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tagctttgcatggctgttataagtgttgagcaaggtaatgactgtgaagcactgagtgtt 736

                                                                       
Query: 122 tgtgtgaatattttggtggtgtttctctcatctcactcctcttcctgagcccccattggc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtgtgaatattttggtggtgtttctctcatctcactcctcttcctgagcccccattggc 676

                                                                       
Query: 182 ccagttcatgcatttctatggggctgctagcattaaggaaatgaaagaattttcacctga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccagttcatgcatttctatggggctgctagcattaaggaaatgaaagaattttcacctga 616

                                                                       
Query: 242 tgtttgagatttgaatacctgcctcttggcaaagtagaaatcactcaaaagggtacgagt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtttgagatttgaatacctgcctcttggcaaagtagaaatcactcaaaagggtacgagt 556

                                                                       
Query: 302 atgaatctatgtaagcctctcttctacttttttgaatccaaagtggaatccctaggctga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgaatctatgtaagcctctcttctacttttttgaatccaaagtggaatccctaggctga 496

                                                                       
Query: 362 aatgaagagatcactgaggagaaaagtagatctaagagacatagttggcagatgcctaga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatgaagagatcactgaggagaaaagtagatctaagagacatagttggcagatgcctaga 436

                                                                       
Query: 422 aaaacgcaccccataatatcactggacttttatgcattgagggttggctatggaagaaat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaacgcaccccataatatcactggacttttatgcattgagggttggctatggaagaaat 376

                                                                       
Query: 482 tatgtataccccagacttatctgcagaatagaagagaaaaataaatgggcaatttgttca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tatgtataccccagacttatctgcagaatagaagagaaaaataaatgggcaatttgttca 316

                                                                       
Query: 542 aagttgatgggagggactggaaaaggcaacggaaacagaagctatgatgcttctgtgtct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagttgatgggagggactggaaaaggcaacggaaacagaagctatgatgcttctgtgtct 256

                                                                 
Query: 602 ctagtacacaaggctggcaaaaccacagaaattatcccacagaatgctgcagac 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctagtacacaaggctggcaaaaccacagaaattatcccacagaatgctgcagac 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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