Query= MSMg01no487_n15.b1 MSMg01no487_n15.b1 CHROMAT_FILE:
MSMg01no487_n15.b1 PHD_FILE: MSMg01no487_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:35 2005
(686 letters)
>mm_chr4_63663905_63664990
Length = 1086
Score = 1187 bits (614), Expect = 0.0
Identities = 665/688 (96%), Gaps = 12/688 (1%)
Strand = Plus / Minus
Query: 1 aatatggatgacaaaaggagagagcatgaaagggggagggagagagggagagacataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aatatggatgacaaaaggagagagcatgaaagggggagggagagagggagagacataaaa 750
Query: 61 --gggggggtagaggcaagggcctgctcccatccagcacagaaggcctgtgtgtttcagc 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gggggggggtagaggcaa-ggcctgctcccatccagcacagaaggcctgtgtgtttcagc 691
Query: 119 cttgttctcttctgctccctcctcctaactctcccatactcttctctcctccttcagttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttgttctcttctgctccctcctcctaactctcccatactcttctctcctccttcagttt 631
Query: 179 ttccttttctctttctgcttttacattcctgttagctaaactctgcctaaagccaaggct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttccttttctctttctgcttttacattcctgttagctaaactctgcctaaagccaaggct 571
Query: 239 acaaattcactgttagcaatacaagacataaaggaggacaacaggcaagagccaagggcc 298
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 570 acaaattcactggaagcaatacaagacataaaggaggacaataggcaagagccaagggcc 511
Query: 299 gtgaggcatattttcacagcaacctaagaacccaatagtgtctcgcatgaatttgggagg 358
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 510 atgaggcatattttcacagcaacctaagaacccaattgtgtctcgcatgaatttgggagg 451
Query: 359 cggaaaaatgaaattttgttcctaaccacagcttcaggcgttaaacaacattttgctcac 418
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct: 450 cggaaaaatgaaattttgtttctaaccacagcttcaagcgttaaacaaca---------c 400
Query: 419 tttgctctgatttaccattttacttttctatggagcaaactgaagtggattcaaatagtt 478
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 399 ttcgctctgatttaccattttacttttctatggagtaaactgaagtggattcaaatagtt 340
Query: 479 atcctttcaatgtacatttatttatataatatatgatgaccacatgctaagaatcagaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atcctttcaatgtacatttatttatataatatatgatgaccacatgctaagaatcagaca 280
Query: 539 gaagagggggacattcgggacaaagagaatgagaaagagtgcactgcagtgggaaagatg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gaagagggggacattcgggacaaagagaatgagaaagagtgcactgcagtgggaaagata 220
Query: 599 gaaccaacatgggaaggacgtagttctgctgttacagaggcatggggagtcacaggagga 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaaccaacatgggaagaacgtagttctgctgttacagaggcatggggagtcacaggagga 160
Query: 659 cagacctgatcctcatcacacacctgaa 686
||||||||||||||||||||||||||||
Sbjct: 159 cagacctgatcctcatcacacacctgaa 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_n15.g1 MSMg01no487_n15.g1 CHROMAT_FILE:
MSMg01no487_n15.g1 PHD_FILE: MSMg01no487_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:35 2005
(631 letters)
>mm_chr4_63643407_63644437
Length = 1031
Score = 1205 bits (623), Expect = 0.0
Identities = 629/631 (99%)
Strand = Plus / Plus
Query: 1 cagtcttggatttccgttttcctctcctgtttgtgtatagatcccactgttgctatggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcttggatttccgttttcctctcctgtttgtgtatagatcccactgttgctatggca 260
Query: 61 cctgcttgtttacagtacctgttgttgctatggcactgactggctgggatcgccttccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcttgtttacagtacctgttgttgctatggcactgactggctgggatcgccttccgc 320
Query: 121 ggcttattccatagagttcaatttcgtactcagtggcctctctgagacctgttatgtccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttattccatagagttcaatttcgtactcagtggcctctctgagacctgttatgtccc 380
Query: 181 tggtacgttcgggggaagggagggatatttcttgtggctcagattgctttttggtatctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtacgttcgggggaagggagggatatttcttgtggctcagattgctttttggtatctc 440
Query: 241 tgatcctgataacaaaactgtcgaatatcccttcatcagcagtccaggacagacggaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatcctgataacaaaactgtcgaatatcccttcatcagcagtccaggacagacggaaac 500
Query: 301 cgtctggagtggcatctgaaactagaaggttgtcaacttccggttcagcttctagaggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtctggagtggcatctgaaactagaaggttgtcaacttccggttcagcttctagaggga 560
Query: 361 gagaagatggtggaagaaggaggagacagagcattaattagccatccatgcagtcttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaagatggtggaagaaggaggagacagagcattaattagccatccatgcagtcttcct 620
Query: 421 tctggtggagtatcagaatgcagtgctgcctcggttttcagagacagagtgtcctgagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggtggagtatcagaatgcagtgctgcctcggttttcagagacagagtgtcctgagat 680
Query: 481 accaggaaagaaaatcattccacattaaaaaagtctagtagggagaggagaaggaaaaca 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 accaggaaagaaaatcattccacattaaaaaagtctagtagggggaggagaaggaaaaca 740
Query: 541 cggagctgacacattcaatacaagccaagcattcacttgcatctgtgagttttgtctaaa 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 cggagctgacacattcaatacaagccaagcattcgcttgcatctgtgagttttgtctaaa 800
Query: 601 agtaactgtatcagtccacatctggactcgg 631
|||||||||||||||||||||||||||||||
Sbjct: 801 agtaactgtatcagtccacatctggactcgg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
