Query= MSMg01no488_a14.b1 MSMg01no488_a14.b1 CHROMAT_FILE:
MSMg01no488_a14.b1 PHD_FILE: MSMg01no488_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:50 2005
(618 letters)
>mm_chr4_126410627_126411644
Length = 1018
Score = 1123 bits (581), Expect = 0.0
Identities = 605/613 (98%)
Strand = Plus / Plus
Query: 5 gaattcctttgttcccccaccccaattctaagaagcttgcccaaggtctgggtctctgct 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttgggcacccaccccaattctaagaagcttgcccaaggtctgggtctctgct 264
Query: 65 tctgtctaacttgcctctgtcttacctttcctaggcatggttagaactcggtcttcagac 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtctaatttgcctctgtcttacctttcctaggcatggttagaactcggtcttcagac 324
Query: 125 ccaaaactctactaactctactcaaggggtgtctcccactcctgcctttgactaattcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaaactctactaactctactcaaggggtgtctcccactcctgcctttgactaattcaa 384
Query: 185 aagacaaacaaatatggaggcaaacaacaacagcagcagcaacaacaaccaaccgaccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 aagacaaacaaatatggaggcaaacaacaacagcagcagcaacaacaaccaacggaccaa 444
Query: 245 ggagaggccctcacattcttagaacacctcatataccaaacgacaaattccagaacacac 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 ggagaggccctcacattcttagaacacctcaaataccaaacgacaaattccagaacacac 504
Query: 305 gttaggtattcagagaagcccccaaatagacactatatcacaacacccacagatacaaat 364
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 gttaggtattcagagaagcccccaaatagaaactatatcacaacacccacagatacaaat 564
Query: 365 cacgaatacagtcacagcagcaaacacaccccaagaaacactgctgcctagaaaaggaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacgaatacagtcacagcagcaaacacaccccaagaaacactgctgcctagaaaaggaac 624
Query: 425 atagagtgtgcacaggaccctaagctcagagacacagacagtcctggaagcagcagacct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atagagtgtgcacaggaccctaagctcagagacacagacagtcctggaagcagcagacct 684
Query: 485 ttccaggagcacacagcccgtcccaagctagtcatctcttctaatcctaaatgcttttaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttccaggagcacacagcccgtcccaagctagtcatctcttctaatcctaaatgcttttaa 744
Query: 545 agaaaatcctctgccctgggaggtgaggggaaatggaagcacctccctccccgccccgtt 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 agaaaatcctctgccctgggaggtgaggggaaatggaagcacctccctccccgccccggt 804
Query: 605 ctgctgagaagaa 617
|||||||||||||
Sbjct: 805 ctgctgagaagaa 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_a14.g1 MSMg01no488_a14.g1 CHROMAT_FILE:
MSMg01no488_a14.g1 PHD_FILE: MSMg01no488_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:50 2005
(630 letters)
>mm_chr4_126571325_126572357
Length = 1033
Score = 1122 bits (580), Expect = 0.0
Identities = 588/592 (99%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 1 tgggccagcaagatggctagcctgataatctgaattcaatccctagaacctacataaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgggccagcaagatggctagcctgataatctgaattcaatccctagaacctacataaagg 533
Query: 61 tagaataactccttacattgtcctttgattatggcaaatatatctattacatattaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tagaataactccttacattgtcctttgattatggcaaatatatctattacatattaacat 473
Query: 121 ataataaccactactaataa---taatactacttctactaataataatggcaaaacaaaa 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 472 ataataaccactactaataatagtaatactacttctactaataataatggcaaaacaaaa 413
Query: 178 attaagagtcctgaactgtagcaaaggtaaaagaagattcctgtcattatatcttacttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attaagagtcctgaactgtagcaaaggtaaaagaagattcctgtcattatatcttacttt 353
Query: 238 ctttatatatattgagagttttgaaatgaaactgatttttatgtcgtaggattattcttt 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctttaaatatattgagagttttgaaatgaaactgatttttatgtcgtaggattattcttt 293
Query: 298 ttaaggcttttagaagcactttgttaagtgtctagaaaagtccttagtagttgttgtttt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttaaggcttttagaagcactttgttaagtgtctagaaaagtccttagtagttgttgtttt 233
Query: 358 gtattttttgttttgtttataattattttaggttttcagacagtgttactaggtagctct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtattttttgttttgtttataattattttaggttttcagacagtgttactaggtagctct 173
Query: 418 ggctggttgcagatgtaacatgtactctatagaccagactggcttcaaactcccagaggt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggctggttgcagatgtaacatgtactctatagaccagactggcttcaaactcccagaggt 113
Query: 478 ccatctgcctcttccttccatctgctgattttaaggcgtgtgctaccatgtataacttgc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccatctgcctcttccttccatctgctgattttaaggcgtgtgctaccatgtataacttgc 53
Query: 538 ttactagattgtttgcttgcttgcttgtttgtttgttttttgagactgggtt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttactagattgtttgcttgcttgcttgtttgtttgttttttgagactgggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1033
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1023
Effective search space: 634260
Effective search space used: 634260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
