BAC Information

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BAC

Clone NameMSMg01-488D06
Chromosome4 (Build37)
Map Location 14,271,840 - 14,308,547
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488D06.T7 (MSMg01no488_d06.b1)MSMg01-488D06.TJ (MSMg01no488_d06.g1)
ACCAG566983AG566984
length684730
length of high quality
(start - end)		652 (33 - 684)632 (77 - 708)
definitionCHROMAT_FILE: MSMg01no488_d06.b1 PHD_FILE: MSMg01no488_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:03 2005CHROMAT_FILE: MSMg01no488_d06.g1 PHD_FILE: MSMg01no488_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,307,899 - 14,308,547)(14,271,840 - 14,272,471)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTTTTA
TTTGTTCACCTTCAACTTATTTGTGCCTTTGAAATGGCCACATTTTTCTT
ATAAATAGAACACAGTTGGATTATTTCTTTTCATCCAATTCTGCAAATCT
CTTACTTTTAATTTGAACTCATAGATTTCCCTGTATTTATTTTGTTGTCT
GTGAGATTTTGCAAGCATGCTCTACCATGCCTGGCATTTTTTCATGGGTT
CTGGTGATAAAAGTTGGGTATTCATGCTTGCAAGACATTTTAATGTCTGA
GTTATCCATTCACCTCTTTACATTGACATTTTAATTGGTAACAATTCAGC
CCACATTAGTACAAACTAATTTGTTTCTATGTAGTTCTGTTTTCCCAATT
CTACTTTTATTCTTCAAAATTATATCTTTACATACTATGAGCCTGTACTG
GCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAAAAAGGAG
TTTCAGTTGAGGAAATGCCTCTGTGAGATCCAACTGTAAGTCATTTTCTC
AATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGG
CTGGTAATCTTGGTTCTATAAGAGAGCAGGCTGGGCAGCTAGTAAGGAAC
ATCGCTCCACGGTCTCTGAATCATCAGCTCCTGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGAACAATTCAAGAGTACGTTC
AAGCAAGTAGATCTCAGAAGGTATACACAGGGCAATTCCATTAGAAGAGA
AAAACCATGAAAGGGAGTGAAGAGATGCTGAGGCCGTTACAAAGCATCCA
CCGAGAAAACTACTTGAAAAAGACACCTAGGTTACAGAAACACAGACTCC
AAGAAAAGCTTACTAATGAGAGCACTCCTGACAGATGTATGGAGACATGG
CTGTAGTTTGGGTTCCTGCCTCTCTAGAGATCGGTGGTGCTGAACATTGT
TCTCAAATACATGTACAATTGCCTTGTGCTATTTTGCAAAATCTGTATTC
TATCCTTTCTGTACATTCTGTTTTACATCTTTGTTGGATATTTTCTTTAT
TTACATTTCAAATGTTATCCCCTTTCTCGGTTTCTTCCCACCAGAAAGCC
CCATGCCATTCCCCATCCCCATGTTTTCATGAGGGTGTTCCACTACCCAC
CTAAAGACTCTTGCCTCCCTGCCCGCAAATTTCCCTACACAAGGGATCAA
GCCTTCACGGGACGAAGTGCGTCTCCTCCCATTGATGCCCTACAAGGCCA
TCCTCTGCTACATATGCAGCTTTAGCTATGGTTCCCTCCATGTGTACTCT
TTTTGTTGGTGCTTTAGTCCCTGGAAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_d06.b1 MSMg01no488_d06.b1 CHROMAT_FILE:
MSMg01no488_d06.b1 PHD_FILE: MSMg01no488_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:03 2005
         (652 letters)



>mm_chr4_14307666_14308717
          Length = 1052

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttttatttgttcaccttcaacttatttgtgcctttgaaatggccacattt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ggaattcattttttatttgttcaccttcaacttatttgtgcctttgaaatggccacattt 823

                                                                       
Query: 64  ttcttataaatagaacacagttggattatttcttttcatccaattctgcaaatctcttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttcttataaatagaacacagttggattatttcttttcatccaattctgcaaatctcttac 763

                                                                       
Query: 124 ttttaatttgaactcatagatttccctgtatttattttgttgtctgtgagattttgcaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttttaatttgaactcatagatttccctgtatttattttgttgtctgtgagattttgcaag 703

                                                                       
Query: 184 catgctctaccatgcctggcattttttcatgggttctggtgataaaagttgggtattcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catgctctaccatgcctggcattttttcatgggttctggtgataaaagttgggtattcat 643

                                                                       
Query: 244 gcttgcaagacattttaatgtctgagttatccattcacctctttacattgacattttaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gcttgcaagacattttaatgtctgagttatccattcacctctttacattgacattttaat 583

                                                                       
Query: 304 tggtaacaattcagcccacattagtacaaactaatttgtttctatgtagttctgttttcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggtaacaattcagcccacattagtacaaactaatttgtttctatgtagttctgttttcc 523

                                                                       
Query: 364 caattctacttttattcttcaaaattatatctttacatactatgagcctgtactggctag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caattctacttttattcttcaaaattatatctttacatactatgagcctgtactggctag 463

                                                                       
Query: 424 ttttgtgtcaacttgacacagctggagttatcacagaaaaaggagtttcagttgaggaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttttgtgtcaacttgacacagctggagttatcacagaaaaaggagtttcagttgaggaaa 403

                                                                       
Query: 484 tgcctctgtgagatccaactgtaagtcattttctcaattagtgatcaagggggaaaggcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgcctctgtgagatccaactgtaagtcattttctcaattagtgatcaagggggaaaggcc 343

                                                                       
Query: 544 ccttgtgggtgggaccatctctgggctggtaatcttggttctataagagagcaggctggg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccttgtgggtgggaccatctctgggctggtaatcttggttctataagagagcaggctggg 283

                                                            
Query: 604 cagctagtaaggaacatcgctccacggtctctgaatcatcagctcctgc 652
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cagctagtaaggaacatcgctccacggtctctgaatcatcagctcctgc 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_d06.g1 MSMg01no488_d06.g1 CHROMAT_FILE:
MSMg01no488_d06.g1 PHD_FILE: MSMg01no488_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:03 2005
         (632 letters)



>mm_chr4_14271640_14272671
          Length = 1032

 Score = 1222 bits (632), Expect = 0.0
 Identities = 632/632 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaacaattcaagagtacgttcaagcaagtagatctcagaaggtatacacagggcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaacaattcaagagtacgttcaagcaagtagatctcagaaggtatacacagggcaat 260

                                                                       
Query: 61  tccattagaagagaaaaaccatgaaagggagtgaagagatgctgaggccgttacaaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccattagaagagaaaaaccatgaaagggagtgaagagatgctgaggccgttacaaagca 320

                                                                       
Query: 121 tccaccgagaaaactacttgaaaaagacacctaggttacagaaacacagactccaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaccgagaaaactacttgaaaaagacacctaggttacagaaacacagactccaagaaa 380

                                                                       
Query: 181 agcttactaatgagagcactcctgacagatgtatggagacatggctgtagtttgggttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttactaatgagagcactcctgacagatgtatggagacatggctgtagtttgggttcc 440

                                                                       
Query: 241 tgcctctctagagatcggtggtgctgaacattgttctcaaatacatgtacaattgccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctctctagagatcggtggtgctgaacattgttctcaaatacatgtacaattgccttg 500

                                                                       
Query: 301 tgctattttgcaaaatctgtattctatcctttctgtacattctgttttacatctttgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctattttgcaaaatctgtattctatcctttctgtacattctgttttacatctttgttg 560

                                                                       
Query: 361 gatattttctttatttacatttcaaatgttatcccctttctcggtttcttcccaccagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatattttctttatttacatttcaaatgttatcccctttctcggtttcttcccaccagaa 620

                                                                       
Query: 421 agccccatgccattccccatccccatgttttcatgagggtgttccactacccacctaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccccatgccattccccatccccatgttttcatgagggtgttccactacccacctaaag 680

                                                                       
Query: 481 actcttgcctccctgcccgcaaatttccctacacaagggatcaagccttcacgggacgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actcttgcctccctgcccgcaaatttccctacacaagggatcaagccttcacgggacgaa 740

                                                                       
Query: 541 gtgcgtctcctcccattgatgccctacaaggccatcctctgctacatatgcagctttagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgcgtctcctcccattgatgccctacaaggccatcctctgctacatatgcagctttagc 800

                                           
Query: 601 tatggttccctccatgtgtactctttttgttg 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 tatggttccctccatgtgtactctttttgttg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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