XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCTG
TAGCTCAATGCTAATAGGTGTTGGATTTTTCAAAAGACAGAACAGAGGCT
TTGAAGAAAGCCCTTACTGGAATCCTCTGCTCAGTTCAAGGTCATACATT
AGACTTGTTGGTCAAAGGTATGCAGAGTAATTTAATGTGGCCTTAACCTA
AATGAAGTGGATTTTCCTCCACATCTGTAAAAATTTAGGTTAATAACGTA
TGTTTATTTGCAAAGTGCTTTGGTCTGCTCAGACTGAAAAAGTCACAAGT
GTGAATGTTTTTATTATTGTAGTTATTACTTGGCAAGAATCACTTCAGCT
CACATTTGTTAATTGTTATCTTGTTTACAGCTGTGAAAACATGCTTAGCG
TGAACAGTTATCAATGGTGGCTGATATAGAACTCACAAGCCAGACAGCTT
TCAGAAGAGTAATTTTTTTAAGACAGGGTGACCAAGAAAGAGGAACTTCA
GACGTTGATCAATATATGAATGGAGATTTTGAATAGAATATGTAAAATAT
ATATAGCCCAGATATATTTGAATATAATATGTAATATTTATCCCATATAT
GAGTTGAGAAGGCTCTTTTCTTGCTTTGCTCTCTGTACTTTTACCATCAC
CACCTGCTCTCCATCTATTGATCATATCTTACAGCTTGCTTTTTCAAGTT
TTGCTATTTTATT

CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCAGAAAAAAAATGTTAAGCATCCTTAATCATCAGGGGAATG
CAAATCAAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGA
AACACTTTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACAACTCTCGA
AATCAGTCTTGCGGTTCTCCGATAATTGGGCATAGTACTACAGGAGGATC
CACAATACTTCTCCTGGGCATATATCCAGAAGATTTCCCAATGGGAAAGA
AAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAACAATT
GTGGTACATTTACACAATGGTATACTATGCAGCTATTAAAATGAATGAAT
TTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGAGCATCATCCTGAGT
ATGGTAACCCAATCCCAAAAGAAGTCACATGATATATACTCACTGATAAG
TAGATATTAGCCCAGAAACTTACAATACCCAAGATATAAGATATGATTTG
TGAAACATATGAAACTCAAGAAGTAAGAAGACCAAAGTGT

Query= MSMg01no488_k17.b1 MSMg01no488_k17.b1 CHROMAT_FILE:
MSMg01no488_k17.b1 PHD_FILE: MSMg01no488_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:39 2005
         (649 letters)



>mm_chr4_27185627_27186673
          Length = 1047

 Score = 1139 bits (589), Expect = 0.0
 Identities = 631/645 (97%), Gaps = 2/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taataggtgttggatttttcaaaagacagaacagaggctttgaagaaagcccttactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 taataggtgttggatttttcaaaagacagaacagaggctttgaagaaagcccttactgga 784

                                                                       
Query: 61  atcctctgctcagttcaaggtcatacattagacttgttggtcaaaggtatgcagagtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 783 atcctctgctcagttcaaggtcatacattagacttgttggtcaaaggtatgcagaataat 724

                                                                       
Query: 121 ttaatgtggccttaacctaaatgaagtggattttcctccacatctgtaaaaatttaggtt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 723 ttaatgtggccttaacctaaatgaagtggattttcctccacaactgtaaaaatttaggtt 664

                                                                       
Query: 181 aataacgtatgtttatttgcaaagtgctttggtctgctcagactgaaaaagtcacaagtg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 agtaacgtatgtttatttgcaaagtgctttggtctgctcagactgaaaaagtcacaagtg 604

                                                                       
Query: 241 tgaatgtttttattattgtagttattacttggcaagaatcacttcagctcacatttgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 603 tgaatgtttttattattgtagttattacttggcaagaatcacttcagct-acatttgtta 545

                                                                       
Query: 301 attgttatcttgtttacagctgtgaaaacatgcttagcgtgaacagttatcaatggtggc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 544 attgttatcttgtttacagctgtgaaaacatgcttagtgtgaacagttatcaatggtggc 485

                                                                       
Query: 361 tgatatagaactcacaagccagacagctttcagaagagtaatttttttaagacagggtga 420
           ||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||
Sbjct: 484 tgatatagaactcacaagccagacagctttcagaaga-ttatttttttaataaagggtga 426

                                                                       
Query: 421 ccaagaaagaggaacttcagacgttgatcaatatatgaatggagattttgaatagaatat 480
           |||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct: 425 ccaaaaaagaggaacttcagatgttgttcaatatatgaatggagattttgaataaaatat 366

                                                                       
Query: 481 gtaaaatatatatagcccagatatatttgaatataatatgtaatatttatcccatatatg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 gtaaaatatatatagcccagatatatttgaatataatatgtaatatttattccatatatg 306

                                                                       
Query: 541 agttgagaaggctcttttcttgctttgctctctgtacttttaccatcaccacctgctctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agttgagaaggctcttttcttgctttgctctctgtacttttaccatcaccacctgctctc 246

                                                        
Query: 601 catctattgatcatatcttacagcttgctttttcaagttttgcta 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 catctattgatcatatcttacagcttgctttttcaagttttgcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space:   662643
Effective search space used:   662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)