Query= MSMg01no488_m11.b1 MSMg01no488_m11.b1 CHROMAT_FILE:
MSMg01no488_m11.b1 PHD_FILE: MSMg01no488_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(230 letters)
>mm_chr4_52463000_52463629
Length = 630
Score = 426 bits (220), Expect = e-124
Identities = 226/228 (99%)
Strand = Plus / Minus
Query: 1 tgtaaaatatgatcagtctatttaacgaggaaatgtgttccacggttcatatactggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtaaaatatgatcagtctatttaacgaggaaatgtgttccacggttcatatactggtga 369
Query: 61 tagcagtcttcaaagtgcacatagccatcaagacaccctattaaatgtatttggcaatag 120
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 368 tagcagtcttcaaagtgcacatagccatcaggacaccctattaaacgtatttggcaatag 309
Query: 121 tgttgctatgattcttgcagaacttccaagtacaaccaccacctgtgtccacattagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgttgctatgattcttgcagaacttccaagtacaaccaccacctgtgtccacattagtga 249
Query: 181 agctgactcacataaggacctacagaagcaacatagcaaccaaactct 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agctgactcacataaggacctacagaagcaacatagcaaccaaactct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space: 137241
Effective search space used: 137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no488_m11.g1 MSMg01no488_m11.g1 CHROMAT_FILE:
MSMg01no488_m11.g1 PHD_FILE: MSMg01no488_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:47 2005
(629 letters)
>mm_chr4_52318383_52319411
Length = 1029
Score = 1151 bits (595), Expect = 0.0
Identities = 622/633 (98%), Gaps = 4/633 (0%)
Strand = Plus / Plus
Query: 1 tcactgattaaagtttagaccctctttaaaaatgtaatgaaccaaaacagtttttcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcactgattaaagtttagaccctctttaaaaatgtaatgaaccaaaacagtttttcttat 256
Query: 61 attaagtaccgtctcagtaaatctagaagttaagtattaaattgaatgatttttcactaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attaagtaccgtctcagtaaatctagaagttaagtattaaattgaatgatttttcactaa 316
Query: 121 attaaaaacaccagccactttactaaatattaaaaggtgttgaaatatttttggccaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attaaaaacaccagccactttactaaatattaaaaggtgttgaaatatttttggccaaat 376
Query: 181 aggattagtttccttttcctcattggggcacagaaaacctttaaaaacaatctggactta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggattagtttccttttcctcattggggcacagaaaacctttaaaaacaatctggactta 436
Query: 241 acttataacttactataaaaacacccagtccatatatttgtgcctatatactcattggag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acttataacttattataaaaacacccagtccatatatttgtgcctatatactcattggag 496
Query: 301 agtgatcaaactccagtggccagtttcttgtgttttactggttgagggatggagggtaca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 agtgatcaaactccagtggccagtttcttgtgttttattggttgagggatggagggtaca 556
Query: 361 ggggttggagagtggacctggaaagactgcaaagctggcgtgattggggtgcattgtatg 420
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 557 ggggttggagagtggacctggaaagactgcaaagcaggcatgattggggtgcattgtatg 616
Query: 421 aaattttcaaataattaatataaaatataatgttaggagaaacccttgacaaaaacaaaa 480
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 617 aaattttcaaataattaataaaaaatataatgttaggagaatcccttgacaaaaacaaaa 676
Query: 481 acaaacaaacaaaca----taaagacacacatcaacaatatcaaaaccacttactaatgc 536
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acaaacaaacaaacaaacataaagacacacatcaacaatatcaaaaccacttactaatgc 736
Query: 537 aactaccacccatgaaagtcttcccttgatactgcattcctatgtatcctttaggttaga 596
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aactaccacccatgaacgtcttcccttgatactgcattcctatgtatcctttaggttaga 796
Query: 597 actctgaacattgcctttgcttctctcttgcca 629
|||||||||||||||||||||||||||||||||
Sbjct: 797 actctgaacattgcctttgcttctctcttgcca 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
