XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTT
TTCCGACCCTCTGTCCCTATTCAGTTCAGATATTACTGTTATTTTTTCAC
TGATTACTTTTTCCCTTTAATATCTTAAATATGGGTGTTACCCTATCCTA
TCTTGTTATCTTCTACCTGCCTTCCACCAACCTCCTTACATACATTTTCT
GAGAGTCCTGATGGCTACACATACATAGTCCTAAGCCTCCTTAGTCTCAG
ATATATCTGAAGATACTCAGTGCGTATACCCTATTCACAACATTCCCATT
GGTACTGTTTGGTTTCTCAAATTATGTTAATGGTCCCAAATAGGCTTTAA
GCCTAAATCATATGATACCATATATTACTATTCATTTTCACATCAATAAG
ACTATTGTGCCCTCTGTTGTGATTCTTCAAGGTTCCTCAGATACTGTCTG
CTTCTAGCACCTCCCATTTATATTATAGCAAGTCTTCTATCCCCTGCCGC
TACTGAGAAGTTCCTCTTCTACGCAGTCCAAAGGCAAACAGTTCTGATGT
TCGTTCTAAGCACTCTCTTATTGATACTACTTATCTGATAAGAGATATTG
ATTCTTCCCGTTGTCTACCAATTTAAGTCAAAGTACCTCATTCTGTGAGT
TGACTCAGGATCTTTTATATTCTCACACTGCATCCTCACACTGAGTATAA
GATGAAGCCAAGTAGACAGTAGATATCCTGTTGGTCATT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACANGCGGGGGGGCGACTATTTTATTTTATTTTATTTTA
TTTTATTTTATTTTATTTTATCCTATTTTATTTTATTTTATATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGTTTATT
TATTTTTTGGCGGGCGGCGCCGGGGGTTCTCTGCGGGGCCCGGGCTGTTT
TGTTGGTCGCGTCGGCGGCCTGGGGGGTCTCGGGCGCTGGTGGCGGTGGG
GCGGGGCCGCGCGGGTTCCCTCGTTTTAGGGCGGGGGCGGCGGTAGCCGC
GCGCGGGGTTTTGCCTCCCCCCCGTTGCCCGGGGGGGCTGGGTGCGGCGG
GTGGGGGGGTGGGGGGTCCCCCCCCTTATCGTTGTGGGCGCGCGGGCGTG
CCCCCTGCTGGCGCTGGGCGGCGCCTGTCGCCGGGGCCGGGGGGGGTCGG
CTGCGCTGCGCGCGGGGGGGCGGGGGGGCCGCCGCGCCGGTTGGCGCGGC
CGGCGCGGGGGTGGGCCGCGCCCCTTTGCGCGGCGGTGGGTGCGGCCCGC
CGCGTGGCCTCGGTGGGGGTGCGGCTTCGCCCTGTGGGCGCGGCTTTGCG
CGGGTCCGCCGTGTGTTGCCCGGGTGTCGGCGGGCTGGGCGTGGTGGGGT
GGCCGGGTGCGCGGGGCGCCGGCGCCGTTGTGCTGGGTGCTTCGGTGGGC
CGGCGGCGGCGGGGTCCGTCGCGCGGGGTCCGGGGCGGCGCGGGCGGTTG
GCCGTGTGTTGGGGCGCGGGGTGCGCTGGGGTTCGTGCGCGCCGGGCGCG
TGGTCGGCGCTCTCGCGG

Query= MSMg01no488_n17.b1 MSMg01no488_n17.b1 CHROMAT_FILE:
MSMg01no488_n17.b1 PHD_FILE: MSMg01no488_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:53 2005
         (676 letters)



>mm_chr4_34247047_34248122
          Length = 1076

 Score = 1230 bits (636), Expect = 0.0
 Identities = 653/664 (98%), Gaps = 9/664 (1%)
 Strand = Plus / Plus

                                                                       
Query: 21  accctctgtccctattcagttcagatattactgttattttttcactgattactttttccc 80
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 accccctgtccctattcagttcagatattactgttattttttcactgattactttttccc 271

                                                                       
Query: 81  tttaatatcttaaatatgggtgttaccctatcctatcttgttatcttctacctgccttcc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttaatatcttaaatatgggtgttaccctatcctatcttgttatcttctacctgccttcc 331

                                                                       
Query: 141 accaacctccttacatacattttctgagagtcctgatggctacacatacatagtcctaag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 accaacctccttacatacattttctgagagtcctgatggctacacatacatagtcctaag 391

                                                                       
Query: 201 ---------cctccttagtctcagatatatctgaagatactcagtgcgtataccctattc 251
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gctcaccttcctccttagtctcagatatatctgaagatactcagtgcgtataccctattc 451

                                                                       
Query: 252 acaacattcccattggtactgtttggtttctcaaattatgttaatggtcccaaataggct 311
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acaacattcccattggtactgcttggtttctcaaattatgttaatggtcccaaataggct 511

                                                                       
Query: 312 ttaagcctaaatcatatgataccatatattactattcattttcacatcaataagactatt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttaagcctaaatcatatgataccatatattactattcattttcacatcaataagactatt 571

                                                                       
Query: 372 gtgccctctgttgtgattcttcaaggttcctcagatactgtctgcttctagcacctccca 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtgccctctgttgtgattcttcaaggttcctcagatactgtctgcttctagcacctccca 631

                                                                       
Query: 432 tttatattatagcaagtcttctatcccctgccgctactgagaagttcctcttctacgcag 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tttatattatagcaagtcttctatcccctgccgctactgagaagttcctcttctacgcag 691

                                                                       
Query: 492 tccaaaggcaaacagttctgatgttcgttctaagcactctcttattgatactacttatct 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tccaaaggcaaacagttctgatgttcgttctaagcactctcttattgatactacttatct 751

                                                                       
Query: 552 gataagagatattgattcttcccgttgtctaccaatttaagtcaaagtacctcattctgt 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gataagagatattgattcttcccgttgtctaccaatttaagtcaaagtacctcattctgt 811

                                                                       
Query: 612 gagttgactcaggatcttttatattctcacactgcatcctcacactgagtataagatgaa 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gagttgactcaggatcttttatattctcacactgcatcctcacactgagtataagatgaa 871

               
Query: 672 gcca 675
           ||||
Sbjct: 872 gcca 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)