BAC Information

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BAC

Clone NameMSMg01-488P05
Chromosome4 (Build37)
Map Location 15,735,653 - 15,907,802
singlet/doubletdoublet
Overlap geneLOC633695, Calb1, Decr1, Nbn
Upstream geneOtud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
Downstream geneOsgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P05.T7 (MSMg01no488_p05.b1)MSMg01-488P05.TJ (MSMg01no488_p05.g1)
ACCAG567552AG567553
length698736
length of high quality
(start - end)
391 (308 - 698)414 (323 - 736)
definitionCHROMAT_FILE: MSMg01no488_p05.b1 PHD_FILE: MSMg01no488_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005CHROMAT_FILE: MSMg01no488_p05.g1 PHD_FILE: MSMg01no488_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,907,412 - 15,907,802)(15,735,653 - 15,736,066)
sequence
GCTATACGACTCACATTCAAAAAGAGGATCCGCGGAATTCATGGTTCCCT
GAAAACTTTCTACCTGATGAGTTAAAGAGAGCTGGAGTCAAGAAATCAAG
CCAAACAGGCTACACTTAGAACACACATCAACTGAATACTGGAATTAGTA
TGTGACCATGTCTCTATCAGTCCTCTGTACAACAGTACATCATTCACTCA
GGGAGTACTAAACCGTTTGCTAACACACAGTTTATAACAGTGCAGAGGAG
TGACACTTGCTTCTCTGCTTTCTTGGTTGTCAGAGATCTGAGTACAAATT
TTGTTGCAAACGTCCACTAGAGGAGAGGTGACTTTCAGGGAGGCAGAGAG
GAAACAATTAAGGATTACACCAAAGTAAACTACCCTTTCTTCCCTACCTT
CCAAGATAGGTTATTATAGAAAAAGACGAGAAAGGTGACTCTGGAACTTT
GGTTTAATCTCTCTTAAAGACAGGCAGCACACAAAAACAAAGCTAAAGTC
GGAGGAAGGTGAAGAAACACGAAGTGCAGTCTGTATAATGGGCCTAGTGG
GTTTTAAGGACAAAACTGAGATGGAGCCGGGCGTGGTGGCGCATGCCTCT
CATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCC
AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGATACACAGAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCCGAGGAATTCTGTGGAGACTCCGGCAATGTTCCA
GAGTTGGAGTGTGCAAGATAAAAGTATGGCTCGTATTAATAGTTAAAAAA
AAATTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCT
TGGGTACTTTCTCTAGCTCCTCCATTGGGGACCCTGTGTTCCATCCAATA
GCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCACCGTCATAGCCTC
ACAACCAGTACCCTCTTATTTTATGTCTCTAGCTGCATATGTAGCAGAAG
ATGGCCTAGTCAGCCATCATTGGGCCAAAGCAGTTTTCAGTCTACGGATT
ATAGTGTAATCTCAGTTAAAACACTTACTTTTCACAGAAATAGAAATGAT
TGTTAAAATTCATATATAGGCACAAAAATCATAGATAACCAAAGCAATCT
TTATCAAGAATAAGAAGAATGGAGGCTTTACCATACCTTTCCCAAGTTAT
ACTACAGAGGCACAGTAATAAAAACAGTACAGTATTGGAACAAAAATAGA
CACAAAGATCAATCCAATAGAAGACCTATAATTTACTTTCTTTCTGTTGT
TCCAGAAAGGTAAATCTCATCTTATTGCTCTATTTTAGCTAAAGTTGTAA
GTGCTCTATTAAATGTAAATCTAATGTGAAAAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p05.b1 MSMg01no488_p05.b1 CHROMAT_FILE:
MSMg01no488_p05.b1 PHD_FILE: MSMg01no488_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
         (391 letters)



>mm_chr4_15907336_15908126
          Length = 791

 Score =  756 bits (391), Expect = 0.0
 Identities = 391/391 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacgtccactagaggagaggtgactttcagggaggcagagaggaaacaattaaggatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaacgtccactagaggagaggtgactttcagggaggcagagaggaaacaattaaggatta 408

                                                                       
Query: 61  caccaaagtaaactaccctttcttccctaccttccaagataggttattatagaaaaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caccaaagtaaactaccctttcttccctaccttccaagataggttattatagaaaaagac 348

                                                                       
Query: 121 gagaaaggtgactctggaactttggtttaatctctcttaaagacaggcagcacacaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gagaaaggtgactctggaactttggtttaatctctcttaaagacaggcagcacacaaaaa 288

                                                                       
Query: 181 caaagctaaagtcggaggaaggtgaagaaacacgaagtgcagtctgtataatgggcctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 caaagctaaagtcggaggaaggtgaagaaacacgaagtgcagtctgtataatgggcctag 228

                                                                       
Query: 241 tgggttttaaggacaaaactgagatggagccgggcgtggtggcgcatgcctctcatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tgggttttaaggacaaaactgagatggagccgggcgtggtggcgcatgcctctcatccca 168

                                                                       
Query: 301 gcacttgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gcacttgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagt 108

                                          
Query: 361 gagttccaggacagccagggatacacagaga 391
           |||||||||||||||||||||||||||||||
Sbjct: 107 gagttccaggacagccagggatacacagaga 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no488_p05.g1 MSMg01no488_p05.g1 CHROMAT_FILE:
MSMg01no488_p05.g1 PHD_FILE: MSMg01no488_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
         (414 letters)



>mm_chr4_15735453_15736266
          Length = 814

 Score =  739 bits (382), Expect = 0.0
 Identities = 406/414 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctctagctgcatatgtagcagaagatggcctagtcagccatcattgggccaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtctctagctgcatatgtagcagaagatggcctagtcagccatcattgggccaaagca 260

                                                                       
Query: 61  gttttcagtctacggattatagtgtaatctcagttaaaacacttacttttcacagaaata 120
           ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 261 gttttcagtctacagattatagtgtaatctcagttaaaatacttatttttcacagaaata 320

                                                                       
Query: 121 gaaatgattgttaaaattcatatataggcacaaaaatcatagataaccaaagcaatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatgattgttaaaattcatatataggcacaaaaatcatagataaccaaagcaatcttt 380

                                                                       
Query: 181 atcaagaataagaagaatggaggctttaccatacctttcccaagttatactacagaggca 240
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct: 381 atcaagaataagaagaatggaggctttatcataccttttccaagttatactacagagcca 440

                                                                       
Query: 241 cagtaataaaaacagtacagtattggaacaaaaatagacacaaagatcaatccaatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtaataaaaacagtacagtattggaacaaaaatagacacaaagatcaatccaatagaa 500

                                                                       
Query: 301 gacctataatttactttctttctgttgttccagaaaggtaaatctcatcttattgctcta 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatataatttactttctttctgttgttccagaaaggtaaatctcatcttattgctcta 560

                                                                 
Query: 361 ttttagctaaagttgtaagtgctctattaaatgtaaatctaatgtgaaaaatac 414
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttttagctaaagttgtaagtgctctattaaatgtaaagctaatgtgaaaaatac 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)