Query= MSMg01no489_h04.b1 MSMg01no489_h04.b1 CHROMAT_FILE:
MSMg01no489_h04.b1 PHD_FILE: MSMg01no489_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(568 letters)
>mm_chr4_74921693_74922660
Length = 968
Score = 1071 bits (554), Expect = 0.0
Identities = 560/562 (99%)
Strand = Plus / Minus
Query: 7 gaattctatactttcaatatgaattattttgatcatacctctcatgctattctttcaact 66
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaattctatacattgaatatgaattattttgatcatacctctcatgctattctttcaact 589
Query: 67 gcttagctacctctgcaacccttcctttcaataagttcccctcttgtctttttttttttt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gcttagctacctctgcaacccttcctttcaataagttcccctcttgtctttttttttttt 529
Query: 127 ttaatgatacaccgagtttaattaggactacttgcataagtataggtaggaatcttaaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttaatgatacaccgagtttaattaggactacttgcataagtataggtaggaatcttaaaa 469
Query: 187 atcttaaagtaatgaagtgaattttgtttttttgtttgtttctgagtatatcagaaaatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atcttaaagtaatgaagtgaattttgtttttttgtttgtttctgagtatatcagaaaatt 409
Query: 247 gtctataatgactgtaatggtgccatttatttatttattgtttggtttttctcaacctga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtctataatgactgtaatggtgccatttatttatttattgtttggtttttctcaacctga 349
Query: 307 cactagtgttttcaatttaaaaaagaaaatccccttttagattgcttatgggcaaatctg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cactagtgttttcaatttaaaaaagaaaatccccttttagattgcttatgggcaaatctg 289
Query: 367 ggatattttcttgattaatgattatgtgggaaggcccagcccactgtggatagtaccacc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggatattttcttgattaatgattatgtgggaaggcccagcccactgtggatagtaccacc 229
Query: 427 ccctcaccggtagtcctggacagtattaaaaagaaagctgagcaagctaagggcagcaac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccctcaccggtagtcctggacagtattaaaaagaaagctgagcaagctaagggcagcaac 169
Query: 487 ccagtaagcaacactctctgacgttagagtttcagttcctgcttccaggttcctgccctg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ccagtaagcaacactctctgacgttagagtttcagttcctgcttccaggttcctgccctg 109
Query: 547 agttcctacattggcttccatg 568
||||||||||||||||||||||
Sbjct: 108 agttcctacattggcttccatg 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_h04.g1 MSMg01no489_h04.g1 CHROMAT_FILE:
MSMg01no489_h04.g1 PHD_FILE: MSMg01no489_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(591 letters)
>mm_chr4_74739228_74740219
Length = 992
Score = 1129 bits (584), Expect = 0.0
Identities = 590/592 (99%), Gaps = 1/592 (0%)
Strand = Plus / Plus
Query: 1 aaaaagaattccagccacacattttcatatgttatatagattgggcccttgactattagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagaattccagccacacattttcatatgttatatagattgggcccttgactattagt 260
Query: 61 caaggttctggaggaaatcataggcatgttcaaatggttaactgaagataacttaattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggttctggaggaaatcataggcatgttcaaatggttaactgaagataacttaattta 320
Query: 121 aaagcttttgcagatccaagggtataaaatgttttttcaaaggcaggagaatttagtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcttttgcagatccaagggtataaaatgttttttcaaaggcaggagaatttagtaac 380
Query: 181 attatgaaaccactgtcacgtcttgatattcaatgacaattaaaaagaatagtagtacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatgaaaccactgtcacgtcttgatattcaatgacaattaaaaagaatagtagtacca 440
Query: 241 gaaacgataagatctaaagctatgttgatgtaatagctcctcaaacatactcaagctcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacgataagatctaaagctatgttgatgtaatagctcctcaaacatactcaagctcta 500
Query: 301 gtcatgaaaatatatggatgagttaagtaaaatagtcaaaattttaaataaataaaatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatgaaaatatatggatgagttaagtaaaatagtcaaaattttaaataaataaaatag 560
Query: 361 aaagaaatataaaaagaagggaaaaaa-gacattttgtagatggaattaagtttggtgac 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 561 aaagaaatataaaaagaagggaaaaaaagacattttgtagatggaattaagtttgatgac 620
Query: 420 cttgtttgaaataaggtcattattactaattatcaagatggatctatctaatcattaagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgtttgaaataaggtcattattactaattatcaagatggatctatctaatcattaagc 680
Query: 480 ttcttaaagtagagtgtattccctctgctattatcagaaagaaatgtgatgaaggacaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttaaagtagagtgtattccctctgctattatcagaaagaaatgtgatgaaggacaag 740
Query: 540 tcaaagagatgtgatatgatattgctgggtttcaagatgaaggagaggggca 591
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaagagatgtgatatgatattgctgggtttcaagatgaaggagaggggca 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
