BAC Information

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BAC

Clone NameMSMg01-489P13
Chromosome4 (Build37)
Map Location 92,546,596 - 92,547,053
singlet/doubletsinglet
Overlap genenone
Upstream gene4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P13.T7 (MSMg01no489_p13.b1)MSMg01-489P13.TJ (MSMg01no489_p13.g1)
ACCAG568321AG568322
length7581,105
length of high quality
(start - end)		511 (49 - 559)---
definitionCHROMAT_FILE: MSMg01no489_p13.b1 PHD_FILE: MSMg01no489_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:24 2005CHROMAT_FILE: MSMg01no489_p13.g1 PHD_FILE: MSMg01no489_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTCTTTATGTTCTGGATGGTTACAGGATGGGTAGATAAAAA
GTTTTTCCTCCATTTATGTGCTCTATTAGTGACTTCCATATTGCATATAA
GTATTTTATCAGACATAATGGTATACGTCAACTCTACTATTAGCTACTAG
GCAAAAGAATTATTTCAACCGGACATGGTGGTGCACGCCTTTAATCCCAG
CACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCAATGCAAGCCTGGT
CTACAAAAGTGAGTTCCAGGACAGCCAGGACAGAGAAACCCTGTCTCGAA
AAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAAACAAA
AACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAACAAAAAA
ATATTATTTCAAAGAAGAAATACAGACTTATGTGACCATGAGATTATCTC
AAGTATTTACCTGGTCTGTTTAAAATATTAATCTTCAATCATTTTAAATG
ATTTTTGGTTGAGTGATAATAAGGGNTTTTGTTTCCCTTCCCTTTACCAA
GGGAAAACCCGAGTTTCCCCCCCCCCTTGGGGGAAGGGGAAAAAAAAAAT
ATTTTTCTTTTTAAAAAAGTTTTGTGTTGTGTTCTTTTTGTTGGGGGGAG
AAAAAAAAAAAAAAATGGGGGGGGGGGGGGAGGGGTTTCTTTTTTTCTCC
TCCCCCCC

CTTTATTACCGTGCCGTGTCTGCACGGGGTGGTGAGGTAGTTTCCTCTCC
CATATGTGTGGNGGGTTGTGATGTTGCAGATTACTCTCCCTACCGAGAAT
TGTATATATTTTTTGGTGTACGGGGATTGTTTTAGTATTTTCTCGTATAT
ATAATATATCCCGCCCACCAGCTTCTACCCCTATTTTTTTTATATTTTGC
TCTTTCTCAGCCCCGCGCCTCCCGCTATTATTGTATGTTTCTTTTATCCT
ATCCGCGCGTCTAGTTTGTTTCTTCTCGCCGTTTATCTTTAACACAACAT
TTAGTCATCTCCCTCTCTCCTCTACTGATTTTTATTTCCTACCCCTCGGG
CCGCTGCTGCGCGCTTCTGCCTCGCGGGGCATGCGGAGCGTCGCTAGAGC
AGCGAGGAGATCTTCCGATGTAGAGCTCTCGTGACTTACATGATAGATAG
GCACTGCGGCACCGCGACACACTTCGCGCGCTTGTTTCACATATCTATTA
CCGATTATGCTTGTAGTCGTGTTTGTAGGTAGTAAGAGTTACTCCGCGGC
CTGCATCCTCCCGTGCCGTTTACGCTATCAGCTAGCATCCGGGTTACGGT
TCGCGTGATGTCGGGCGTATATATTTCTATCACCTCGCGCGTTGTCTCGA
TTCTTTATCCTTACCCACATCTTTTTGATGATTTTGATATGACGCCTTGC
TTAGATCTGTTTTATCCAGCCCCCGATCCAAGTCTTGTTAAGCCTTCGTG
TTGTAACATGACTAACCGCCATAGTGCTTTACACGCTATTCGATTTACCG
GTGCCTAGTTCTCCGTCCGTCGCGCCCCTCCGTGTTTTTGTATCTTCCTG
TCACCTTTCTCACTATACGGCCCGCCCGCGTTATTTGATTTTTATATATA
TTTAAGAATGAGTGTAGCGATCAGGCCGCCCGCCCCCACGCGAATCACAC
TTATCTTCATATTAGTATTCTCTCGCCGCCGCGTGTTCATATAATCGATG
TCTTTACGCCATATTTATAACGGTGAGCGTCGTCTGCTAAGCGATCGTAG
ACACGTACACGTAACGAACTTGGACTGGTGATCTAGAGCATCGACGATGA
GTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p13.b1 MSMg01no489_p13.b1 CHROMAT_FILE:
MSMg01no489_p13.b1 PHD_FILE: MSMg01no489_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:24 2005
         (511 letters)



>mm_chr4_92546392_92547303
          Length = 912

 Score =  750 bits (388), Expect = 0.0
 Identities = 453/506 (89%), Gaps = 49/506 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctt-tatgttctggatggttacaggatgggtagataaaaagtttttcctcc 63
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctaatatgttctggatggttacaggatgggtagataaaaagtttttcctcc 264

                                                                       
Query: 64  atttatgtgctctattagtgacttccatattgcatataagtattttatcagacataatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttatgtgctctattagtgacttccatattgcatataagtattttatcagacataatgg 324

                                                                       
Query: 124 tatacgtcaactctactattagctactaggcaaaagaattatttcaaccggacatggtgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatacgtcaactctactattagctactaggcaaaagaattatttcaaccggacatggtgg 384

                                                                       
Query: 184 tgcacgcctttaatcccagcacttggaaggcagaggcaggtggatttctgagttcaatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 tgcacgcctttaatcccagcacttggaaggcagaggcaggtggatttctgagttcaaggc 444

                                                                       
Query: 244 aagcctggtctacaaaagtgagttccaggacagccaggacagagaaaccctgtctcgaaa 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagcctggtctacaaaagtgagttccaggacagccaggacagagaaaccctgtctcgaaa 504

                                                                       
Query: 304 aaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaacaaaaacaaaaacaa 363
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 505 aaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaa---------------------- 542

                                                                       
Query: 364 aaacaaaaacaaaaacaaaaacaaaaacaaaacaaaaaaatattatttcaaagaagaaat 423
                                     ||||||||||||||||||||||||||||||||||
Sbjct: 543 --------------------------acaaaacaaaaaaatattatttcaaagaagaaat 576

                                                                       
Query: 424 acagacttatgtgaccatgagattatctcaagtatttacctggtctgtttaaaatattaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 577 acagacttatgtgaccatgagattatctcaagtatttacctggtctgtttataatattaa 636

                                     
Query: 484 tcttcaatcattttaaatgatttttg 509
           ||||||||||||||||||||||||||
Sbjct: 637 tcttcaatcattttaaatgatttttg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space:   451902
Effective search space used:   451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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