NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCCGGTACTACCTTCTATCTGTAGGGCTCCATACCAGCAGTGTTT
CTTCTAGCATTCTCTGCCATTCCCAGGTCCCGTGTTGGTTTGCCAAATTG
TTGGGGCCGGCCTGCGGCTCTCATGTCTGGGTTCAAGCCTGGGAGGCAAC
TGGAGCTGAAAAAGAAGAGAGAACCTAGGCAGGTAGAGAATTAATGGAAC
CAAGACAAGCTAGTCTGCTCAAGGTTCAAATGTTTAATAATAAAATCTGT
GTTTATAAAGAGGGAAGCCCATCCCCAATCACGCCAAGTTTCTTGATGTA
GAGTTGTGAAGTTGTTAGAACAGCCTTTTAGCAGAAACTCACCAACTTCA
CAGTTTGCAGCTAACTCCGGAAAATCTTGGAGAACCAGTTCAGCCTCAGG
CAGGTGGCAGGAAGTGTCACATCAAAGGAGAGTGATGAGAAGCAGCACAG
CAGGTAGCCCCGCCTCAGTGGTGTATACAGTCTGAACCAGCCTATCTAGG
CTGAAGGAGATTACACACTAGGAGGGTATTTATTGTATGACTCTGTAGAT
GTGAAGTCTAAGCTTCAATAGAGACTACAAGTAGAGAAATCAGGGCCTGG
GGCCAGTTATCAAGTGCATGGATTGTAGCCTGCCAACAAGGGATATTATG
TGTGCCACAGGCTGCCAAGGTGGAGCAGAAAAACTGAAGCTGGGCAGTGG
TGGCACACACCTTTAATC

ATACAATGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTTTTTATGACAGTCTTCTGACAAGGTGTCA
AGCTTTTCTGCTACTTTAACACTTAAGAGTAGAGCTGCGGGGGGCCGGTG
TGCGCGTCGGGCCTGNCAAANNGGGACTCAACTTTACTAACCCACAACCA
TAGNAAANNNNCCCTATCTCCATCTCCGTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAANNANNNNNNNNNNNNNNNNNNNNNNNNAAAN
NNNNNNNNTTANNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNN
AAANANANNNNNNNNNNNANNNNNNNNNNNNAAANANNNANAAAAAAAAA
AAANNNNNANNNNNAAAANNNNNNNANNNNAAAAAANNNNNNAANANNNN
AAAANNNNNNNNANNNAAAAAAANAAAAAAANAAAAAAAAAAAAAAAAAA
AAAAAAANNAAAAAAAANAAAAANANNAANNAAANNAAANNANNNNNAAA
AAAAAAAAAAAAAAAAAAAAAAAAAANNANNANAAAANANAANAAAAAAA
AAANNAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAATTTTATTTATTA
TTTTTTGTTTT

Query= MSMg01no490_b19.b1 MSMg01no490_b19.b1 CHROMAT_FILE:
MSMg01no490_b19.b1 PHD_FILE: MSMg01no490_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:36 2005
         (712 letters)



>mm_chr4_49493290_49494401
          Length = 1112

 Score = 1332 bits (689), Expect = 0.0
 Identities = 703/711 (98%), Gaps = 7/711 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccggtac----taccttctatctgtagggctccataccagcagtgtttcttctag 61
           ||||||||||||    |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccggtacgaatt---ttctatctgtagggctccataccagcagtgtttcttctag 261

                                                                       
Query: 62  cattctctgccattcccaggtcccgtgttggtttgccaaattgttggggccggcctgcgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cattctctgccattcccaggtcccgtgttggtttgccaaattgttggggccggcctgcgg 321

                                                                       
Query: 122 ctctcatgtctgggttcaagcctgggaggcaactggagctgaaaaagaagagagaaccta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctcatgtctgggttcaagcctgggaggcaactggagctgaaaaagaagagagaaccta 381

                                                                       
Query: 182 ggcaggtagagaattaatggaaccaagacaagctagtctgctcaaggttcaaatgtttaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcaggtagagaattaatggaaccaagacaagctagtctgctcaaggttcaaatgtttaa 441

                                                                       
Query: 242 taataaaatctgtgtttataaagagggaagcccatccccaatcacgccaagtttcttgat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taataaaatctgtgtttataaagagggaagcccatccccaatcacgccaagtttcttgat 501

                                                                       
Query: 302 gtagagttgtgaagttgttagaacagccttttagcagaaactcaccaacttcacagtttg 361
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtagagttgtgaagttgtcagaacagccttttagcagaaactcaccaacttcacagtttg 561

                                                                       
Query: 362 cagctaactccggaaaatcttggagaaccagttcagcctcaggcaggtggcaggaagtgt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagctaactccggaaaatcttggagaaccagttcagcctcaggcaggtggcaggaagtgt 621

                                                                       
Query: 422 cacatcaaaggagagtgatgagaagcagcacagcaggtagccccgcctcagtggtgtata 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cacatcaaaggagagtgatgagaagcagcacagcaggtagccccgcctcagtggtgtata 681

                                                                       
Query: 482 cagtctgaaccagcctatctaggctgaaggagattacacactaggagggtatttattgta 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cagtctgaaccagcctatctaggctgaaggagattacacactaggagggtatttattgta 741

                                                                       
Query: 542 tgactctgtagatgtgaagtctaagcttcaatagagactacaagtagagaaatcagggcc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgactctgtagatgtgaagtctaagcttcaatagagactacaagtagagaaatcagggcc 801

                                                                       
Query: 602 tggggccagttatcaagtgcatggattgtagcctgccaacaagggatattatgtgtgcca 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggggccagttatcaagtgcatggattgtagcctgccaacaagggatattatgtgtgcca 861

                                                              
Query: 662 caggctgccaaggtggagcagaaaaactgaagctgggcagtggtggcacac 712
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 caggctgccaaggtggagcagaaaaactgaagctgggcagtggtggcacac 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)