BAC Information

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BAC

Clone NameMSMg01-490D06
Chromosome4 (Build37)
Map Location 119,157,600 - 119,158,270
singlet/doubletsinglet
Overlap geneBC057371
Upstream geneTie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12
Downstream geneLOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490D06.T7 (MSMg01no490_d06.b1)MSMg01-490D06.TJ (MSMg01no490_d06.g1)
ACCAG568498AG568499
length752751
length of high quality
(start - end)		639 (76 - 714)655 (82 - 736)
definitionCHROMAT_FILE: MSMg01no490_d06.b1 PHD_FILE: MSMg01no490_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:43 2005CHROMAT_FILE: MSMg01no490_d06.g1 PHD_FILE: MSMg01no490_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGG
ATCCGCGGAATTCTATCAATTGCGCCACATCTTCAGCCCAGCTACACTAA
TATCACCCGCCTTCGCTCCACACCCCTTCTTTTCTTCCTTTTCCTCTCTT
TTCTTCTCTTCTCTTCCTTCTCTTCTCTTCTCTTTTCTTTTCCTTTCTTT
TTTCTCTTCTCTTCTCTTCTCTTCTCTTCTTTCCTCTTTCCTCTCCTCAT
CTCTCCTCTCATTTTTTCTTTTCCTTTCCTTTCTTTTCTTTTTTTGTTTG
TTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGC
TGTCCTGGAACTCACTTTGTAGACCCGGCTGGCCTTGAACTCAGAAATCT
GCCCACCTCTGCCTCCCAAGTGCTGAGATTAAAGGAGTGTGCCACCACCG
CCCGGCTCTCCACATCCTTCCTAACACTATCATCATCCTGTATTTTTTGT
CGATATGTTTTTTTTTATAAATATGAGTGTTTTGCCTCCACATATTTCTG
TGCATCATGAGCATGGCTGGTGACCTTGGAGGTCAGAATAGGGAGTCAGG
TCCCCTGGAACTAGAGTTAACAATGGTTGTGGACTGCCATGTAGTGCTGG
GAACCAAACCCAGGACTTCTGCAAGAGCAGCTGTGCTCTTAACCTCTGCG
CCATCTCTCCACCCATCATGTTATCCCATGTTTCTAAATGTCCCCATTCT
TA

TTTTTNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAATTGGTGATTGATG
TGGGAGGGCCCAGTCCACTGGGGGTGGGGCTACCCTAGGCAAGTGGTCTG
CAGCTATAGAAAAAGCAGGAGCTGGAGCTGGAGAGATGACTCAGCAATTA
AAAGCACATAACTGTTCTTCCAGAGGACCAGAGTTCCAGTTCCAGCAACC
ACATCGGGCGGCTGGCAACTGCCTTTAACTCCCCCTCCAGAGTAATGCAA
TTCCTCTGACCTCTGCGGGCACACACTCACATGTATGTATGGCACACACT
CACATGTATGTATGGCACACACTCACATGTATGTATGGCACACACTCACA
TGCATTTATGGCACACACTCACATGTATGTATGGCACACACTCACAAGTG
CCTGCTCACACAAACACACAATTACAAACAATGAAACAAATCTCTACACA
TACTAAGATAATGGCAACAACAAAACACTGAGCGACCCAGAAAGCACCTC
CAGGTTCCTGCCCTGAGTTCTTGCCCTGGCCTCTCCCTGTGATGGACTGT
GACCTGAGAAGTGAGCCAAATAAAGCCGCTCCTTCCCAAGTTGCTTTGGT
CTTGGTCTTTATCACAACAAAGGAAAGCAAACTGAGACATTTTCTTTCTT
TCTTCTGAGTCCAGCTGTATGCCTTCCTCTTCCTGGTGACTCTATTTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_d06.g1 MSMg01no490_d06.g1 CHROMAT_FILE:
MSMg01no490_d06.g1 PHD_FILE: MSMg01no490_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:43 2005
         (655 letters)



>mm_chr4_119157423_119158477
          Length = 1055

 Score = 1156 bits (598), Expect = 0.0
 Identities = 644/678 (94%), Gaps = 30/678 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaattggtgattgatgtgggagggcccagtccactgggggtggggctaccctaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tcttaattggtgattgatgtgggagggcccagtccactgggggtggggctaccctaggca 237

                                                                       
Query: 61  agtggtctgcagctatagaaaaagcaggagctggagctggagagatgactcagcaattaa 120
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 238 agtggtctgcagctatagaaaaagcaggcgatggagctggagagatgactcagcaattaa 297

                                                                       
Query: 121 aagcacataactgttcttccagaggaccagagttccagttccagcaaccacatcgggcgg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagcacatacctgttcttccagaggaccagagttccagttccagcaaccacatcgggcgg 357

                                                                       
Query: 181 ctggcaactgcctttaactccccctccagagtaatgcaattcctctgacctctgcgggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctggcaactgcctttaactccccctccagagtaatgcaattcctctgacctctgcgggca 417

                                                                       
Query: 241 cacactcacatgtatgtatggcacacactcacatgtatgtatggcacacactcacatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cacactcacatgtatgtatggcacacactcacatgtatgtatggcacacactcacatgta 477

                                                                       
Query: 301 tgtatggcacacactcacatgcat-----------------------ttatggcacacac 337
           ||||||||||||||||||||||||                       |||||||||||||
Sbjct: 478 tgtatggcacacactcacatgcatgtatggcacacactcacatgcatttatggcacacac 537

                                                                       
Query: 338 tcacatgtatgtatggcacacactcacaagtgcctgctcacacaaacacacaattacaaa 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcacatgtatgtatggcacacactcacaagtgcctgctcacacaaacacacaattacaaa 597

                                                                       
Query: 398 caatgaaacaaatctctacacatactaagataatggcaacaacaaaacactgagcgaccc 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caatgaaacaaatctctacacatactaagataatggcaacaacaaaacactgagcgaccc 657

                                                                       
Query: 458 agaaagcacctccaggttcctgccctgagttcttgccctggcctctccctgtgatggact 517
           |||||||||||||       |||||||||||||||||||||||||||||| |||||||||
Sbjct: 658 agaaagcacctcc-------tgccctgagttcttgccctggcctctccctatgatggact 710

                                                                       
Query: 518 gtgacctgagaagtgagccaaataaagccgctccttcccaagttgctttggtcttggtct 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gtgacctgagaagtgagccaaataaagccgctccttcccaagttgctttggtcttggtct 770

                                                                       
Query: 578 ttatcacaacaaaggaaagcaaactgagacattttctttctttcttctgagtccagctgt 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttatcacaacaaaggaaagcaaactgagacattttctttctttcttctgagtccagctgt 830

                             
Query: 638 atgccttcctcttcctgg 655
           ||||||||||||||||||
Sbjct: 831 atgccttcctcttcctgg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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