Query= MSMg01no490_g15.b1 MSMg01no490_g15.b1 CHROMAT_FILE:
MSMg01no490_g15.b1 PHD_FILE: MSMg01no490_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:00 2005
(683 letters)
>mm_chr4_17074683_17075765
Length = 1083
Score = 965 bits (499), Expect = 0.0
Identities = 517/523 (98%), Gaps = 2/523 (0%)
Strand = Plus / Minus
Query: 1 actgggaagtaaaattcaaattcacatttcaaatttgaaggttttctgtgacaaaaactg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 522 actgggaagtaaaattcaaattcacatttcaaatttgagggttttctgtgacaaaaactg 463
Query: 61 agtgattggtgttgagctaaaaatactgattcattcagcagataacagctatgccatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtgattggtgttgagctaaaaatactgattcattcagcagataacagctatgccatata 403
Query: 121 aatcagattacaatggtaactaaaacattctttatttttcttttaaaaatattcatagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatcagattacaatggtaactaaaacattctttatttttcttttaaaaatattcatagtt 343
Query: 181 acttactgatgtatactgttgggttatcatttccaaaccactgaaaaatgtagtttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acttactgatgtatactgttgggttatcatttccaaaccactgaaaaatgtagtttgttt 283
Query: 241 tgattttcttaaaattttttaccatattaagtgattacaggaccttaaagagtacacttt 300
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 282 tgaatttcttaaaattttttaccatattaagtgattacaggaccttaaggagtacacttt 223
Query: 301 tctctgtttttaacatcatgttttatctggcatcactaggaggggagctccttagtcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tctctgtttttaacatcatgttttatctggcatcactaggaggggagctccttagtcctg 163
Query: 361 tggaagcttgatgacccagcataggggaacactaggccactgaggtaggagttgatgggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 162 tggaagcttgatgacccagcataggggaacactaggccactgaggtaggagttaatgggc 103
Query: 421 aggtaggg-gagcaacctcatagaggcagggcgatggaatggggggcttatggagagaaa 479
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aggt-gggagagcaacctcatagaggcagggcgatggaatggggggcttatggagagaaa 44
Query: 480 actggaaagggggataacagttgaaatgtaaataattaaaaaa 522
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 actggaaagggggataacagttgaaatgtaaataattaaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_g15.g1 MSMg01no490_g15.g1 CHROMAT_FILE:
MSMg01no490_g15.g1 PHD_FILE: MSMg01no490_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:00 2005
(673 letters)
>mm_chr4_16925810_16926884
Length = 1075
Score = 1263 bits (653), Expect = 0.0
Identities = 669/675 (99%), Gaps = 2/675 (0%)
Strand = Plus / Plus
Query: 1 agcgacatatttggagggatattttgactcaaaagggtgtcaacaattttttaattttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcgacatatttggagggatattttgactcaaaagggtgtcaacaattttttaattttta 260
Query: 61 aacttatacgtcctttgtttatattacagtttccagttttttgtttttatgagatctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttatacgtcctttgtttatattacagtttccagttttttgtttttatgagatctctg 320
Query: 121 tgtggaggaatgtgtacattcctgcatctatatatgttcttgtgcttcctttctcctgtt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggaggaatgtgtacactcctgcatctatatatgttcttgtgcttcctttctcctgtt 380
Query: 181 ttgctctattctgatttgtttgtttatgtttaatcattttaattttttattatttctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctctattctgatttgtttgtttatgtttaatcattttaattttttattatttctttg 440
Query: 241 atacccatctgttttctaagggcagatagaaagggtatataaatgatcacggtgggtagt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 atacccatctgttttctaagggcagatagaaagggtctataaatgatcacggtgggtagt 500
Query: 301 tatgataggtcaaagcagtacagagttaaaaaaaaaa--gacaatgcagagtttattaca 358
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tatgataggtcaaagcagtacagagttaaaaaaaaaaaagacaatgcagagtttattaca 560
Query: 359 tctaatattcttctgaacattattttatgtttgaatagaatttgacctccttgatcgaaa 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tctaatattcttctggacattattttatgtttgaatagaatttgacctccttgattgaaa 620
Query: 419 ccatagtataaaaaatactttattataggattctaagttcattcaacatgtacctactaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatagtataaaaaatactttattataggattctaagttcattcaacatgtacctactaa 680
Query: 479 ttgactatggcccattaacttcatatttgtgtaaatatccttgtctagcttacagcttac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgactatggcccattaacttcatatttgtgtaaatatccttgtctagcttacagcttac 740
Query: 539 cctagcttctgtgaaactgcttgcttgtgcaaagttgtctggagcagaagatcaaaataa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctagcttctgtgaaactgcttgcttgtgcaaagttgtctggagcagaagatcaaaataa 800
Query: 599 gagaatgtgcatttttcctttaaatgcatgcatgtgttaaatgttcagggttacttttgg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagaatgtgcatttttcctttaaatgcatgcatgtgttaaatgttcagggttacttttgg 860
Query: 659 tccagaacaacttag 673
|||||||||||||||
Sbjct: 861 tccagaacaacttag 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
