NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGGGGCGC
GGAATTCTTTATTTCCCTGAAAAAGTTCTAGGTTACATTTGCGATGTTCA
TGCTACTATTGCATTGTGAGTATGTATTCCTGAATCAGTCATTATTGTAT
CTCTTTAGGTTCATAGCTATGTAAGATTAAGTATTACATTGCTCCTCTCC
TACCCTGAATAACTCATTCCATAACTATGAAAACTCTCCAGTAGAGATGA
AGTGTCTCAATCAATACAAGCTTGGTTTACCCAGATGTTCTGATTCATGT
TTGTGGTGTCTTCTATATTTTGGTATTACCATCAAGTTCTAGAGTAATTA
AGAGCATTGGAAATACCCGATAACATAATAATATAAACTCACTAATAGGT
CATTTGATTGCAACTTTCTTTCCTAATTGTAAATGAATGAAATAAATGCA
TATGCTCAAATTTTTCTATTAAAATAAAATAACTTCAAAACCTTTAATTA
AACAATAAATTGAATAAAAGCCACAAAATTCCAGATTCATATATTTTTAC
CAAATAATTGAAAACTAATTAATTTATTATTATCCAATTAACATAAGCCC
TTGGTTAACAAAATTACCACAATTACATTGCTGATCTTATGAAAACTGCA
ATTACTGGGAATATTTAATTAAAATGTATACATGTATGCCATTCAGTATT
TATAGTGTATGTACATATAACTAGGAAAATAATTTCTTTCTGTC

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGGAAAATGGACATAGTACTACCGGCAGATCCAGCAATACCTC
TCCTAGGCATATATCCAGAAGATGCTCCAACTGGTAAGAAGGACACATTC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATTAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATATACTCACTGATAAGTGGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
AGTGGGAAC

Query= MSMg01no490_k18.b1 MSMg01no490_k18.b1 CHROMAT_FILE:
MSMg01no490_k18.b1 PHD_FILE: MSMg01no490_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:19 2005
         (668 letters)



>mm_chr4_38208461_38209528
          Length = 1068

 Score = 1253 bits (648), Expect = 0.0
 Identities = 663/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggttacatttgcgatgttcatgctactattgcattgtgagtatgtattcctgaatc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaggttacatttgtgatgttcatgctactattgcattgtgagtatgtattcctgaatc 260

                                                                       
Query: 61  agtcattattgtatctctttaggttcatagctatgtaagattaagtattacattgctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcattattgtatctctttaggttcatagctatgtaagattaagtattacattgctcct 320

                                                                       
Query: 121 ctcctaccctgaataactcattccataactatgaaaactctccagtagagatgaagtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctaccctgaataactcattccataactatgaaaactctccagtagagatgaagtgtc 380

                                                                       
Query: 181 tcaatcaatacaagcttggtttacccagatgttctgattcatgtttgtggtgtcttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tcaatcaatacaagcttggtttacccagatgttctgattcatgtttgtggtgtcttcaat 440

                                                                       
Query: 241 attttggtattaccatcaagttctagagtaattaagagcattggaaatacccgataacat 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attagggtattaccatcaagttctagagtaattaagagcattggaaatacccgataacat 500

                                                                       
Query: 301 aataatataaactcactaataggtcatttgattgcaactttctttcctaattgtaaatga 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataatataaactcactgataggtcatttgattgcaactttctttcctaattgtaaatga 560

                                                                       
Query: 361 atgaaataaatgcatatgctcaaatttttctattaaaataaaataacttcaaaaccttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaaataaatgcatatgctcaaatttttctattaaaataaaataacttcaaaaccttta 620

                                                                       
Query: 421 attaaacaataaattgaataaaagccacaaaattccagattcatatatttttaccaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaaacaataaattgaataaaagccacaaaattccagattcatatatttttaccaaata 680

                                                                       
Query: 481 attgaaaactaattaatttattattatccaattaacataagcccttggttaacaaaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attgaaaactaattaatttattattatccaattaacataagcccttggttaacaaaatta 740

                                                                       
Query: 541 ccacaattacattgctgatcttatgaaaactgcaattactgggaatatttaattaaaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccacaattacattgctgatcttatgaaaactgcaattactgggaatatttaattaaaatg 800

                                                                       
Query: 601 tatacatgtatgccattcagtatttatagtgtatgtacatataactaggaaaataatttc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatacatgtatgccattcagtatttatagtgtatgtacatataactaggaaaataatttc 860

                   
Query: 661 tttctgtc 668
           ||||||||
Sbjct: 861 tttctgtc 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)