Query= MSMg01no490_l13.b1 MSMg01no490_l13.b1 CHROMAT_FILE:
MSMg01no490_l13.b1 PHD_FILE: MSMg01no490_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(521 letters)
>mm_chr4_64659090_64660010
Length = 921
Score = 878 bits (454), Expect = 0.0
Identities = 503/527 (95%), Gaps = 12/527 (2%)
Strand = Plus / Plus
Query: 1 aggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggacagatgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcaagagcgcagaaacactaacatattgagggtagatgttgaggctggacagatgcc 260
Query: 61 taatggcagatgtctttgtattaagtaattccactcactggtgccaacacaaatgaacaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 taatggcagatgtctttgtattaagtaattctactcactggtgccaacacaaatgaacaa 320
Query: 121 cc------ttttttgtttacttatgaccagcatagtatgtgaattagagtgtaccatttt 174
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggaaa------gtttacttatgaccagcatagtatgtgaattagagtgtaccatttt 374
Query: 175 ggaaagaagttgtctctttttttttttcttgnganagctacagggntcaagcactcttat 234
||||||||||||||||| | | ||||||| || |||||||| | ||||||||||||||
Sbjct: 375 ggaaagaagttgtctctcatagtctttcttgtgatagctacagtgttcaagcactcttat 434
Query: 235 tatagtaggatgatggctagatttcagaagatcctcgaaattggataaggaatatcaatt 294
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaagtaggatgatggctagatttcagaagatcctcgaaattggataaggaatatcaatt 494
Query: 295 cctaatcgaaattggattaggaatctaaaattaatcaacaaccacttttcttattctttg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cctaatcgaaattggattaggaatctaaaattaatcaacaaccacttttcttattctttg 554
Query: 355 ttctctttctttcttcatttgttctttcctatgtatttacattcaaaaataacttactgt 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttctctttcttttttcatttgttctttcctatgtatttacattcaaaaataacttactgt 614
Query: 415 atacaatttctctgaaatctacacagttaacatctcttaaaaacatttaagctcaatgaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atacaatttctctgaaatctacacagttaacatctcttaaaaacatttaagctcaatgaa 674
Query: 475 tttgaatgatattttaaagttagatgctacagccagccatctctaat 521
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tttgaatgatattttaaagttagatgctacagccagccatctctaat 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_l13.g1 MSMg01no490_l13.g1 CHROMAT_FILE:
MSMg01no490_l13.g1 PHD_FILE: MSMg01no490_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:23 2005
(626 letters)
>mm_chr4_64778670_64779695
Length = 1026
Score = 920 bits (476), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Minus
Query: 135 gaagagaaactgcctaagaaatcagaactagaagctaggtgtggtgactcacacatttaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gaagagaaactgcctaagaaatcagaactagaagctaggtgtggtgactcacacatttaa 967
Query: 195 tcccagcactagggaggcagaggcaggtggatttctgagttcgaggccagcctggtctac 254
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 966 tcccagcactagggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac 907
Query: 255 aaagtgagtttcaggacagccagggctatacagagaaaccttgtctcacaaacaaacaaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaagtgagtttcaggacagccagggctatacagagaaaccttgtctcacaaacaaacaaa 847
Query: 315 caaacaaacaaacatgaaaaggaatcagaactaggcaataaggggtagtctcttcttttg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 caaacaaacaaacatgaaaaggaatcagaactaggcaataaggggtagtctcttcttttg 787
Query: 375 gtacacttggccctgttttgttgatcacaagaggaacattggataatttctgtttaactc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gtacacttggccctgttttgttgatcacaagaggaacattggataatttctgtttaactc 727
Query: 435 caggacaaacacaagagaagaaccttgagtcacataatgaacaaagctttcaacattttc 494
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 726 caggacaaacacaagagaagaaccttgagtcacatattgaacaaagctttcaacattttc 667
Query: 495 cccccagagattcaaaaatccccatccaattgaccactttttacatgaactgagatggaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cccccagagattcaaaaatccccatccaattgaccactttttacatgaactgagatggaa 607
Query: 555 ggcattcacctcatccctgtttggtgcagctgtttccccgtgaagcgtttccagcaatat 614
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 606 ggcattcacctcatccctgtttggtgcagctgtttccccgtgaagcgaatccagcaatat 547
Query: 615 tttctgataaac 626
||||||||||||
Sbjct: 546 tttctgataaac 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
