BAC Information

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BAC

Clone NameMSMg01-490M02
Chromosome4 (Build37)
Map Location 72,994,619 - 72,994,966
singlet/doubletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490M02.T7 (MSMg01no490_m02.b1)MSMg01-490M02.TJ (MSMg01no490_m02.g1)
ACCAG568911AG568912
length758742
length of high quality
(start - end)
350 (72 - 421)651 (85 - 735)
definitionCHROMAT_FILE: MSMg01no490_m02.b1 PHD_FILE: MSMg01no490_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:26 2005CHROMAT_FILE: MSMg01no490_m02.g1 PHD_FILE: MSMg01no490_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCACAGCATTTTCTGCCTATTGACACTAAGCCTACAGAAGTCCA
GTCCTTGTTTTCAGCTATCAATGAAGAAGTGCTTCATGGGATCACTATGA
CTTACTGCTGAACTAGTAATGCCTACAAAGTTCCAAGAGATGGAGAGGCA
TAGCACCTAGTTGTGTAACAACTGCCAGTGAACACACCAGGCTTTAGTGG
ACAGTTCTCAACCTAGGGCCACACAACATATCTATCATTAAATTTTGGGA
CACAGAAGAAGACAAAAACTAATGATGGTGGGAAAGAGACATTCAGAAGG
AAGGGGAAAGCCATGGATGGGAGGGAAGTAAGAGAGCATATATTTGGGGG
TGAAGNGTGGGATGGGAAGTGNNNNNNNNNNGNNTTGNGNNNNTGGNNGN
NNNTGNTTNNGANNTTNTTNNTNNNNNTTTTTNNGGGTTTTTTGTTTTTT
GGGTTNTTTTTNGNNAAGGAATGTNTGGTTTGGNTTTTNTGGGTNGNGAA
GGTTTTTTTATTTTTGGATATATTTGAGGTTTTAGGGAGTGGATATTGTT
GGTGGTGGGGAGTTGTGGTTATTTTTGTGGTGATTTTTTTTAGAGGTTGT
ATGTAGTTTTTGTTTTTTATTTATGTGGATTTTTAGTTTGTTTTTATTTT
GTGTATTTATGTGTTTATTTTTTTTATAAAATTGTTTTTTTGGATTATTG
TTTTTTTT
AAAAACCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCCACAAAAATCCATGAACTGAAGTGGA
CTGACTACACTGACTACAAAAACTGCATAGAACAGAACTGCATGAACTCA
ATTGTACGTCACTACATTGCCCGAACTTAACTGAACTGCACTCGCTCAAC
TGCCTTTTACCTTATCCCAGGCTCTTAAAGCTACTAAGTCCATAGTATAA
TAATAAAGTCATCAAACTGTATGTGCTGTCTTAAATCAGAAAATTGACTT
TCAATTAACAATTGGTCTTTTTTTGATATTTTATTAACACCTTTAAGCCT
ATTACAATTTTCCATAACTATAGTTTCTTTTCCGCACTGTTCCAGCCATT
GTAACTGAGAACCAGCTTCCCATACAGATGCTGATAAATCTTTTAGTATT
GAGTGATAATTCAGTTTTGCATGACCCAGGTATTTAACATATGTCCCACA
CAGGGTGAGTGCTTTCCTTAAATTACTATTGATGTCATAAGAAATTTAAA
ATCATGTTTTTAAACAGCATTTCAGGATAGTTGTTCATTTGTGAATTTTC
ACCATTTTGTATCATTTGTTCCTGGGTAACTGGGAAAGCTTCTGTGGTTG
GTCATCTTTCCTTAATTACATTACAAAATAGCACTGTAAAAGATATTTTT
TACATCTGGAATCCAACGTGATTGGAGAAGGAGAAAGTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_m02.b1 MSMg01no490_m02.b1 CHROMAT_FILE:
MSMg01no490_m02.b1 PHD_FILE: MSMg01no490_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:26 2005
         (350 letters)



>mm_chr4_72994419_72995166
          Length = 748

 Score =  615 bits (318), Expect = e-180
 Identities = 342/350 (97%), Gaps = 2/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctattgacactaagcctacagaagtccagtccttgttttcagctatcaatgaagaagtg 60
           ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 201 cctattggcactaagcctacagaaatccagtccttgttttcagctatcaattaagaagtg 260

                                                                       
Query: 61  cttcatgggatcactatgacttactgctgaactagtaatgcctacaaagttccaagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatgggatcactatgacttactgctgaactagtaatgcctacaaagttccaagagat 320

                                                                       
Query: 121 ggagaggcatagcacctagttgtgtaacaactgccagtgaacacaccaggctttagtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaggcatagcacctagttgtgtaacaactgccagtgaacacaccaggctttagtgga 380

                                                                       
Query: 181 cagttctcaacctagggccacacaacatatctatcattaaattttgggacacagaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct: 381 cagttctcaacctagggccacacaacatatctatcattaaattctgggacacaca-gaag 439

                                                                       
Query: 241 acaaaaactaatgatggtgggaaagagacattcagaaggaaggggaaagccatggatggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaaaaactaatgatggtgggaaagagacattcagaaggaaggggaaagccatggatggg 499

                                                             
Query: 301 agggaagtaagagagcatatatttgggggtgaagngtgggatgggaagtg 350
           |||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 agggaaataagagagcatatatttgggggtgaag-gtgggatgggaagtg 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 748
Length adjustment: 9
Effective length of query: 341
Effective length of database: 739
Effective search space:   251999
Effective search space used:   251999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)