BAC Information

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BAC

Clone NameMSMg01-490N12
Chromosome4 (Build37)
Map Location 107,145,561 - 107,145,889
singlet/doubletsinglet
Overlap geneGlis1
Upstream genePcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N12.T7 (MSMg01no490_n12.b1)MSMg01-490N12.TJ (MSMg01no490_n12.g1)
ACCAG568978AG568979
length730730
length of high quality
(start - end)
329 (369 - 697)49 (263 - 311)
definitionCHROMAT_FILE: MSMg01no490_n12.b1 PHD_FILE: MSMg01no490_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:33 2005CHROMAT_FILE: MSMg01no490_n12.g1 PHD_FILE: MSMg01no490_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCACCTAAATTTGCGGTTCGAAAAGANNCACAATCAAAAATTGGGG
CGNGGAANNCNGGTTTCCCAAAAAGAGGGGAGCNNNGAGAGACCACAGGA
CCTTTCCAGACAAGGACGTCGCTGCTCAAGGGCCTTCTGCTTCTTGGCTC
TCCCGGCAGCCTCTTGCCAGCCCTGCATGGGATGCTGGGAAGTAGGTGAG
AGGCACTGTGGGCCCTAGGGTGAACAAAGGCCTAGGCCTTGGAGCCTGTT
TCTGTAACAGACCTGCTCCTTTGCCTGCTAACTTGACAGCCTAGGGAAAG
TACCCTGCCCAGATTTGGTACTAATGTATCTGNGTTAAGAGGCAGTCATG
AGGACATTTTTTCCAAAAGAGACAGGACCTGGTTAAAGAGGCACACAGTC
TTCCTTCCAGCTGCTGCCCAAAGCACAAGTCCCAATGTCTGTCCCATCTG
GGCAGGTCTCCTTCCACCATCTTGCTCAGGAATTCAAACGCACCACTTCT
GACCCATAGTCTTAGCCTCGCAGAAGACCTGAATGTGCCTGACTGTCCCT
GGCACGGCATCTCTTAACTCTTCTATCATGATCCTTTCCAGTACAGAAGC
TAAGGCTAGAGATGTTTGCTGTGTTCAGGTACCACCTTCCTCTCATGATT
TGGGGGTCACCAGGATATGGAGATCACTAGACAGCTGGTTCTGGAGTAGA
CTCTGCCATGTCTCAGATAAGAACGGCTGA
NNNNNCCCCGATGAAGTGGGTATCCNGGNNGGTGCCCGTTTCTTACTTGA
NGGNGAANNNAANNAATTGCAGCATCGGAGAGGCNGNAGACCAGACNGGC
NNCAAAGNCAGNGAAACNNGACNNCCCCCAAANAANACNCAAANNANNNA
NNNGAGNNNGCCNCNGCCNCCNGAGGGCGGGGANNAAAGGCGNNCACNCG
GGNNNNNAAAGCCNCACGGGNCACNAGGCNCGNNCNGNAGGAGNAGGCCC
NANGTTTTTTGCACAGGGCAGGTCTGAGGGAGCACAGAGGGCCATCTTTG
ACCCAGCGNGCAGGCTGCCTTTTTTTTTTGANGGCNCANCAGACNNNGAA
GGAGGAGNNGGGTTAGGCCCACCAAGAAGAGAAAGGAGGGGGCCAGGAAG
ACGGAGCNGGAAAGAACACCCACACACACGGCAGGGNNGGCCACGNCAGG
AAGNNAGCCACANAACGGGCNNCGGGGACANCCCGGACGGGGAAGAGGAG
GCGNNAGCCACANCNNNCCNAAAAGGCCAAGCCGGGCGGNAGCCCACACA
GCCAAGGCCCACCCCAGGGAGACCCAAAGGAAGGNNANNACCCGCCGCGN
CAGGGAGCCCAGGGCCGCCGGGGCNCAGGCACAAAAGCCCCCAACCCANA
CCCACAGTTGTTTTTTTCGCCACTTCCAAAGAACTCCCCTGGACTGTCGG
AGAGGTCCTAAAACTACCTGTGTAGGAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n12.b1 MSMg01no490_n12.b1 CHROMAT_FILE:
MSMg01no490_n12.b1 PHD_FILE: MSMg01no490_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
         (329 letters)



>mm_chr4_107145361_107146089
          Length = 729

 Score =  574 bits (297), Expect = e-168
 Identities = 321/329 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagacaggacctggttaaagaggcacacagtcttccttccagctgctgcccaaagcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 529 gagacaggacctggttaaagaggcacacagtcttccttccagctgctgtggaaagcacaa 470

                                                                       
Query: 61  gtcccaatgtctgtcccatctgggcaggtctccttccaccatcttgctcaggaattcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtcccaatgtctgtcccatctgggcaggtctccttccaccatcttgctcaggaattcaaa 410

                                                                       
Query: 121 cgcaccacttctgacccatagtcttagcctcgcagaagacctgaatgtgcctgactgtcc 180
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 409 cgcaccacttctggcccatagtctcagcctcgcagaagacctgaatgtgcctgactgtct 350

                                                                       
Query: 181 ctggcacggcatctcttaactcttctatcatgatcctttccagtacagaagctaaggcta 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 349 ctggcacggcatctcttaactcttctatcatgatcctttccggtacagaagctaaggcta 290

                                                                       
Query: 241 gagatgtttgctgtgttcaggtaccaccttcctctcatgatttgggggtcaccaggatat 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 289 gagatgtttgctgtgttcaggtaccaccttcctctcaggatttgggggtcaccaggatat 230

                                        
Query: 301 ggagatcactagacagctggttctggagt 329
           |||||||||||||||||||||||||||||
Sbjct: 229 ggagatcactagacagctggttctggagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)