CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATCCTTTCCTTGACTTGTTTCTTAATAACCTTGTCATTTTTGT
CAGCACACTAGTTCTTGATTTAATTACCAACTAATATCTAAATCTCAATG
TGATTAGTTTACTAACTACAGAGGAATGTCATAGGTATGGGGACATGTGG
ACTCCCATATTCAAGTTATTATTATTTCCTACAAATCAATAATTTTGCTC
ATGAAGAAAAAGAGCAAGGTTTTTCAGATGAAAGAAGTTTTGCCCCATCT
CCCAAGGTTATGGTAAAGTATTTACTTTCTGGGAAAGAGGAAATCTTCAG
TGGACCTGCCTGCAAACTCTGAGGGAGGGAGCTCTAGGTAGTAGCTCTGA
TAAGTTGTCATTCACATTTGGGTGATAGAGCTGAGTCACCTATTCTCCAC
ATGATCTTATTAGTTCACCATGGTAATATTAGGCCAAATAATATTTTTCT
TTTTTTAAATCTGCCATTGGCAATTTTTGGAATGAACAAATACTTATTAA
TATGTGCTTGGAAAAGTTATACAGCAACCTAAAATACTGAAAGAGACCCA
TATATATTTAACAGGCAAACTTCTCAATATATATATTTTTTTTTACAAAA
TCACCATTAAGATTATATATGTGATTTTAAAAATATTTTTATTAGGTATT
TTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTACC
CCCTCGACTCCTC

ACGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTTTAGCTCTGTACCCCAATTTTT
AATTGTGTTGTTAGGTACTTTGCAGGCTAATTTCTTGAGTTCTTTATATA
TTTTGGATATTAGCCCTCTATCAGATGTAGAGTTAGTGAAGATTATTTCC
GCTATCTGTAGGTTGCCGATTTGTTCTATTGACAGTGCCTTTTGCCTTAC
AGAAGCTTTTGTAGTTTTTGACATCCCATTTATCAATTCTTGATCTTAGA
GCATGAGCCATTGGAGTTCTGTTCAGGAAATTTCGCCCTTTGCCAATGAG
TTCAAGGTTTTTACCCGCTTTCTCTTCTGTTAGATTCAGTGTAATCTGGT
TTTATGTTGAGGTTCTTGATACACTTGTGCTTAAGCTTTGTGCAAGGCAA
TAAATATTGATCTCTTTTTCATTCTTCTACATACAAGAGTGACAGTTAGA
CTAGCACCATTTATTGAATATGATTTCCTTTTTCCACTGTATATTTTTGG
CTTCTTTTCAAAAATCAAATGTTTATAGGTATGCTGGTTTATTTCTGGGT
GTTTGATTCTATTGCATTGAATAACCTGTCTTCCTCTGTAACAATACCAT
GCAGATGATATGATAGTATATATACATGACCCTGAAAATTTCACCAGAGA
ACACCTAAGCCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTA
ACTCACACAG

Query= MSMg01no490_n17.b1 MSMg01no490_n17.b1 CHROMAT_FILE:
MSMg01no490_n17.b1 PHD_FILE: MSMg01no490_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:34 2005
         (679 letters)



>mm_chr4_18016341_18017424
          Length = 1084

 Score =  961 bits (497), Expect = 0.0
 Identities = 561/591 (94%), Gaps = 17/591 (2%)
 Strand = Plus / Minus

                                                                        
Query: 106  tcataggtatggggacatgtggactcccatattcaagttattattatttcctacaaatca 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tcataggtatggggacatgtggactcccatattcaagttattattatttcctacaaatca 1025

                                                                        
Query: 166  ataattttgctcatgaagaaaaagagcaaggtttttcagatgaaagaagttttgccccat 225
            | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1024 aaaattttgctcattaagaaaaagagcaaggtttttcagatgaaagaagttttgccctat 965

                                                                        
Query: 226  ctcccaaggttatggtaaagtatttactttctgggaaagaggaaatcttcagtggacctg 285
            ||||| |||||||| ||||| |  |||||||||||||||||| |||||||||||||||||
Sbjct: 964  ctcccgaggttatgataaaggaaatactttctgggaaagagggaatcttcagtggacctg 905

                                                                        
Query: 286  cctgcaaactctgagggagggagctctaggtagtagctctgataagttgtcattcacatt 345
            |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 904  cctgcaaactctgagggagggatctctaggtagtagctcttataagttgtcattcacatt 845

                                                                        
Query: 346  tgggtgatagagctgagtcacctattctcc-----------acatgatcttattagttca 394
            ||||||||| ||||||||||||||||||||           |||||||||||||||||||
Sbjct: 844  tgggtgatatagctgagtcacctattctcctgaatgtttccacatgatcttattagttca 785

                                                                        
Query: 395  ccatggtaatattaggccaaataatatttttctttttttaaatctgccattggcaatttt 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  ccatggtaatattaggccaaataatatttttctttttttaaatctgccattggcaatttt 725

                                                                        
Query: 455  tggaatgaacaaatacttattaatatgtgcttggaaaagttatacagcaacctaaaatac 514
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  tggaatgaacaaatacgtattaatatgtgcttggaaaagttatacagcaacctaaaatac 665

                                                                        
Query: 515  tgaaagagacccatatatatttaacaggcaaacttctcaat----atatatatttttttt 570
            |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 664  tgaaagagacccatatatatttaacaggcaaacttctcaatgtatatatatatttttttt 605

                                                                        
Query: 571  t-acaaaatcaccattaagattatatatgtgattttaaaaatattttt-attaggtattt 628
            | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 604  ttacaaaatcaccattaagattatatatgtgattttaaaaatattttttattaggtattt 545

                                                               
Query: 629  tcctcatttacatttccaatgctatcccaaaagtcccccataccctacccc 679
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  tcctcatttacatttccaatgctatcccaaaagtcccccataccctacccc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1084
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1074
Effective search space:   718506
Effective search space used:   718506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)