BAC Information

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BAC

Clone NameMSMg01-490O02
Chromosome4 (Build37)
Map Location 36,065,417 - 36,065,781
singlet/doubletsinglet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490O02.T7 (MSMg01no490_o02.b1)MSMg01-490O02.TJ (MSMg01no490_o02.g1)
ACCAG569006AG569007
length765744
length of high quality
(start - end)
676 (75 - 750)460 (84 - 543)
definitionCHROMAT_FILE: MSMg01no490_o02.b1 PHD_FILE: MSMg01no490_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:36 2005CHROMAT_FILE: MSMg01no490_o02.g1 PHD_FILE: MSMg01no490_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAATAGGAGCCGCGG
AATTCTCACCTTATCCAAACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTATTTTAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGG
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAAC
AAAACACCCATGGAA
TATATCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGC
CCCATTTTTAATGGGGTTATTTGATTTTCCGGAGTCCACCTTCTTGAGTT
CTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGATGTCTTT
TGCCTTGCAGAAGGTTTGCAGTTTCATGAGTTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAGCCATTGCTGTTCTATTCATGAATTTTTCCCCTGTG
CCCATATCTTCAAGGCTTTTCCCCACTTCAGATTTTTAAAACATTATTGA
AAGTACCCATGCTGTATAAAGCTTTAATTAAATTGCCCTTTATAGCCAAA
AAAGGCACATATATTTTGAATTTTAATTATTTATTGAAATGGTTTCATTA
TCCAAATTATAAGTGCTGGTACCCTAGTAAAATGATTGTCACTGAGAAAT
GTGAGTAAAATTTCCATGTGCAGAGTTTGAAAAACCCAGACGTATATGGT
TACACAATCTAGTCATCACAGTTCTCCAAGGCAGCATTGGCTAATATTAG
AAATGCAACACCATATCATAAACAGGTTCACTATCTGTCTTAATTTGGGT
AACTCTTGCTGTGAAGAAACACCATCACCAAAGCAACTTAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_o02.g1 MSMg01no490_o02.g1 CHROMAT_FILE:
MSMg01no490_o02.g1 PHD_FILE: MSMg01no490_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:36 2005
         (460 letters)



>mm_chr4_36064922_36065781
          Length = 860

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 96  atctgatttaggataggtaaagatcctttcccaatctgttggtggtctttttgtcttatt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 atctgatttaggataggtaaagatcctttcccaatctgttggtggtctttttgtcttatt 801

                                                                       
Query: 156 gatgatgtcttttgccttgcagaaggtttgcagtttcatgagttcccatttgtcaattct 215
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 800 gatggtgtcttttgccttgcagaaggtttgcagtttcatgaggtcccatttgtcaattct 741

                                                                       
Query: 216 cgatcttacagcacaagccattgctgttctattcatgaatttttcccctgtgcccatatc 275
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 cgatcttacagcacaagccattgctgttctattcaggaatttttcccctgtgcccatatc 681

                                                                       
Query: 276 ttcaaggcttttccccacttcagatttttaaaacattattgaaagtacccatgctgtata 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 ttcaaggcttttccccacttcagatttttaaaacattattgaaagtacccatgctctata 621

                                                                       
Query: 336 aagctttaattaaattgccctttatagccaaaaaaggcacatatattttgaattttaatt 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagctttaattaaattgccctttatagccaaaaaaggcacatatattttgaattttaatt 561

                                                                       
Query: 396 atttattgaaatggtttcattatccaaattataagtgctggtaccctagtaaaatgattg 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttattgaaatggtttcattatccaaattataagtgctggtaccctagtaaaatgattg 501

                
Query: 456 tcact 460
           |||||
Sbjct: 500 tcact 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)