Query= MSMg01no491_i09.b1 MSMg01no491_i09.b1 CHROMAT_FILE:
MSMg01no491_i09.b1 PHD_FILE: MSMg01no491_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:28 2005
(563 letters)
>mm_chr4_96682435_96683397
Length = 963
Score = 1050 bits (543), Expect = 0.0
Identities = 558/563 (99%)
Strand = Plus / Plus
Query: 1 gattccttgcctaagtctactctttggattcatgggtctcagctcttttgatggtgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattccttgcctaagtctactctttggattcatgggtctcagctcttttgatggtgtctt 260
Query: 61 tgcaatgtagctatgtgctctagcgaccttttccgattccaatgatgctttacagaacac 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcactgtagctatgtgctctagcgaccttttccgattccaatgatgctttacagaacac 320
Query: 121 acatgtaaccctgggatcagcatgattaggggagtttggatgaaagaattctccagtgag 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 acatgtaaccctgggatcagcatgattaggggagcttggatgaaagaattctccagtgag 380
Query: 181 aactggaagcataattgaaaccacagtgcttgccaatagccagtgtcattcgccatgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactggaagcataattgaaaccacagtgcttgccaatagccagtgtcattcgccatgccc 440
Query: 241 attctcttattttgatccttctcgttgaaatccttatttctctatcattagtgaaggcat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctcttaaagtgatccttctcgttgaaatccttatttctctatcattagtgaaggcat 500
Query: 301 ctttatgaagatctacattattgcctaccataaatatggatgtatattctcttccttggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttatgaagatctacattattgcctaccataaatatggatgtatattctcttccttggg 560
Query: 361 acttctgtacatcaaaaggtgtatccacgtacctgatttgacctcatcaaggttggtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttctgtacatcaaaaggtgtatccacgtacctgatttgacctcatcaaggttggtctt 620
Query: 421 cacaaaatatatagtttattctaggtgtgatcagtgaaacaaattggtgaattggttaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaaaatatatagtttattctaggtgtgatcagtgaaacaaattggtgaattggttaag 680
Query: 481 agaaagtcttaataataagcaagctaaccataaaggcattattttgaaaaacatcatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagtcttaataataagcaagctaaccataaaggcattattttgaaaaacatcatgat 740
Query: 541 tgaggttaaggtcagaactgaaa 563
|||||||||||||||||||||||
Sbjct: 741 tgaggttaaggtcagaactgaaa 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_i09.g1 MSMg01no491_i09.g1 CHROMAT_FILE:
MSMg01no491_i09.g1 PHD_FILE: MSMg01no491_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:28 2005
(637 letters)
>mm_chr4_96724153_96725188
Length = 1036
Score = 733 bits (379), Expect = 0.0
Identities = 397/403 (98%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 235 ggaaaattcctaaacagaactccaatggctcatgctctaagatcaagaattgataaatgg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ggaaaattcctaaacagaactccaatggctcatgctctaagatcaagaattgataaatgg 977
Query: 295 gacctcatgaaactggaaagcttctgtaaggcaaaggacatagtcaatagaacaaatcag 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gacctcatgaaactgtaaagcttctgtaaggcaaaggacatagtcaatagaacaaatcag 917
Query: 355 caaccaacagattgggaaaaaaaaaaccttcaccaacccacaaataatacagggtatata 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 caaccaacagattgggaaaaaaaaaaccttcaccaacccacaaataatacagggtatata 857
Query: 415 tccaaaatatataaagaactgctattaagttttttgcatttttttattggaatcgtgtgt 474
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 856 tccaaaatatataaagagctgctattaagttttttgcatttttt-attggaatcgtgtgt 798
Query: 475 accctgttaaaagtgtagaggacaacatttgagaatctgtgttctcctaccagaatgtgg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 accctgttaaaagtgtagaggacaacatttgagaatctgtgttctcctaccagaatgtgg 738
Query: 535 aaatttgggatggcaaccaggtttaaaggattgagagtagatgtgcctcccagtcaagtt 594
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 737 aattttgggatgacaaccaggtttaaaggattgagagtagatgtgcctcccagtcaaatt 678
Query: 595 atctcattagctcaaaacaaaatgcatttaactgagcagcatt 637
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atctcattagctcaaaacaaaatgcatttaactgagcagcatt 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
