Query= MSMg01no491_j19.b1 MSMg01no491_j19.b1 CHROMAT_FILE:
MSMg01no491_j19.b1 PHD_FILE: MSMg01no491_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:34 2005
(597 letters)
>mm_chr4_123043035_123044031
Length = 997
Score = 1147 bits (593), Expect = 0.0
Identities = 596/597 (99%)
Strand = Plus / Plus
Query: 1 ttgcatggcaaatacttttacccactgagccacctcaacagcctcatgagaattcacccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcatggcaaatacttttacccactgagccacctcaacagcctcatgagaattcacccc 260
Query: 61 tttatgctgcatctgaagtccctccatggattgcacagtaccgcaaacctaagtatgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgctgcatctgaagtccctccatggattgcacagtaccgcaaacctaagtatgaga 320
Query: 121 gttggacccatgctcgagaccaagctagaactcagtagtcaaaggccccctagagcttgc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttggacccatgctcaagaccaagctagaactcagtagtcaaaggccccctagagcttgc 380
Query: 181 tgaaacagcatccgaaggctaacctgaaacattaactctaagtgattgcttcccaagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaacagcatccgaaggctaacctgaaacattaactctaagtgattgcttcccaagatg 440
Query: 241 attcacatgtctacattcaggacggtataaagctaaggtcaaaatactctaaattctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcacatgtctacattcaggacggtataaagctaaggtcaaaatactctaaattctcca 500
Query: 301 tacctcatcttcaatcttatctgcatcagttgttggccgataggcatccttgttgggatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacctcatcttcaatcttatctgcatcagttgttggccgataggcatccttgttgggatg 560
Query: 361 taaggcagccacaaattcatagtagtcaatgtagccatccccatctctgtcaaaaatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaggcagccacaaattcatagtagtcaatgtagccatccccatctctgtcaaaaatgtc 620
Query: 421 ggccacagctgtcatctctaacttggtggttgggaactctggggagaagagaacatgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccacagctgtcatctctaacttggtggttgggaactctggggagaagagaacatgatt 680
Query: 481 tgaaacattgaaatactacaaagtgtggagcagactcaaggaaaggccatccagagactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaacattgaaatactacaaagtgtggagcagactcaaggaaaggccatccagagactg 740
Query: 541 ccccacctgaggagccatcccatatacagttaccaaacccagacactattgtggatg 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccccacctgaggagccatcccatatacagttaccaaacccagacactattgtggatg 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_j19.g1 MSMg01no491_j19.g1 CHROMAT_FILE:
MSMg01no491_j19.g1 PHD_FILE: MSMg01no491_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:34 2005
(584 letters)
>mm_chr4_123208481_123209468
Length = 988
Score = 1087 bits (562), Expect = 0.0
Identities = 580/588 (98%), Gaps = 4/588 (0%)
Strand = Plus / Minus
Query: 1 ttttcttttatgtctttagttatgaaaattccaaggactgggaggtgtatgcagtccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttttcttttatgtctttagttatgaaaattccaaggactgggaggtgtatgcagtccttg 729
Query: 61 tacatatagtc----acagtgacacagaagttaatattttgttctttattcttctgaggc 116
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tacatatagtcgcttacagtgacacagaagttaatattttgttctttattcttctgaggc 669
Query: 117 agttttcctcttctttttcttaaaggaagtaaaacatttcagatacgttgcttcttgctc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agttttcctcttctttttcttaaaggaagtaaaacatttcagatacgttgcttcttgctc 609
Query: 177 tttctgctctgtagtaaatgtccttttgaagttggcacatatcatttcttatgcaatttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttctgctctgtagtaaatgtccttttgaagttggcacatatcatttcttatgcaatttt 549
Query: 237 gtgcattaacagcatatttggaatcataactatgtgctagcatttgtatgttttatattt 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgcattaacagcagatttggaatcataactatgtgctagcatttgtatgttttatattt 489
Query: 297 ccaacgtgcccactccagccttgttcatgtaaggcccatgctctactcccaagctaaggc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccaacgtgcccactccagccttgttcatgtaaggcccatgctctactcccaagctaaggc 429
Query: 357 ctgtgctctactcctaacccagccctaaggtttgtggggtttgttgtgatggcgaaaagt 416
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 428 ctgtgctctattcctaacccagccctaaggtttgtggggtttgtcgtgatggcgaagagt 369
Query: 417 agtgtggcttgttcatcttggcgtgtatagagtgtgatgtgaatggtacacttcacagct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtgtggcttgttcatcttggcgtgtatagagtgtgatgtgaatggtacacttcacagct 309
Query: 477 gtgccacacttccttccttaattaactataagggctttgttgccttcacttgtgaataaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgccacacttccttccttaattaactataagggctttgttgccttcacttgtgaataaa 249
Query: 537 gtgccatttttgcagtgaacatctgtgtattgtgaccttgccattgaa 584
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtgccatttttgcagtgaacatctgtgtattgtgaccttgccattgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 988
Length adjustment: 10
Effective length of query: 574
Effective length of database: 978
Effective search space: 561372
Effective search space used: 561372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
