Query= MSMg01no491_j23.b1 MSMg01no491_j23.b1 CHROMAT_FILE:
MSMg01no491_j23.b1 PHD_FILE: MSMg01no491_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
(607 letters)
>mm_chr4_86280061_86281067
Length = 1007
Score = 1040 bits (538), Expect = 0.0
Identities = 568/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 31 gctggagttaaaggcacatgccaccaccatctggtggggagttttcttgatccatgattg 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gctggagttaaaggcacatgccaccaccatctggtggggagttttcttgatccatgattg 948
Query: 91 atgtgggagggcccagctcactgggtggtgtcaaccctgagctgctgcttctgggtgcta 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 atgtgggagggcccagctcactgggtggtgtcaaccctgagctgctgcttctgggtgcta 888
Query: 151 tgag-aaggaggctaagttatctatggtgagcaaactagtaagcagcacccctctgtggc 209
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 887 tgagaaaggaggctaagttatctatggtgagcacactagtaagcagcacccctctgtggc 828
Query: 210 ctctgtatcagtttctgacttgagaagtttgtggtcttattttggtgagatgccttacag 269
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 827 ctctgtatcagcttctgacttgagaagtttgtggtcttagggtggtgagatgccttacag 768
Query: 270 aggcacagagctgaatcttccacagcagagcttaccagagggttcagatattctaggcag 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 767 aggcacagagctgaatcttccacagcagagcttaccagagggttcagatattctagacag 708
Query: 330 agaggaagaaggaaatcaaagagacccagcagcacaaagaaggggattggaaaagggaga 389
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 agagggaggaggaaatcaaagagacccagcagcacaaagaaggggattggaaaagggaga 648
Query: 390 ctcagacagagtggagctagaacacatggtgttcatacaagagggagaagaaatgctggt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ctcagacagagtggagctagaacacatggtgttcatacaagagggagaagaaatgctggt 588
Query: 450 ggaaggggggtgggggaggctgtcttccccctagctgggtcttcagttcactttgtatga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaaggggggtgggggaggctgtcttccccctagctgggtcttcagttcactttgtatga 528
Query: 510 acagcaggcctggaggagatcttggcttcatcttggtagaaggtaacagcaaatgtgctt 569
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acagcaggcctggaggagaccttggcttcatcttggtagaaggtaacagcaaatgtgctt 468
Query: 570 caagccattcccattacaatcagcattgccacaagcct 607
||||||||||||||||||||||||||||||||||||||
Sbjct: 467 caagccattcccattacaatcagcattgccacaagcct 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_j23.g1 MSMg01no491_j23.g1 CHROMAT_FILE:
MSMg01no491_j23.g1 PHD_FILE: MSMg01no491_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
(335 letters)
>mm_chr4_86206757_86207485
Length = 729
Score = 572 bits (296), Expect = e-168
Identities = 320/332 (96%), Gaps = 9/332 (2%)
Strand = Plus / Plus
Query: 4 tgatgatcccataaattaccctccactgttagtggaggaggagggattgggtgctatcat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 207 tgatgatcccataaattaccctccactgttagtggaggaggagggattgggtgctataat 266
Query: 64 cacgactccaatgccatacgccacccgccccacacacacacacacacacacaccactgcc 123
||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 267 cacaactccaatgccatacgccacc--cccc-cacacacacacacacacacaccactgcc 323
Query: 124 tgcctcttgtacctgaatgccaattgctatcagcaggccaccatgtgcacactctgttca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcctcttgtacctgaatgccaattgctatcagcaggccaccatgtgcacactctgttca 383
Query: 184 aggccaaggacagggtcaactatgtgcacacacattgctaaagacagggtccaccatggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggccaaggacagggtcaactatgtgcacacacattgctaaagacagggtccaccatggg 443
Query: 244 cacacactgttcatttccaagaacagggcccaccatgtagtccttacagagtaactggtg 303
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 cacacactgttcatttccaag------gcccaccatgtagtccttacagagtaactggtg 497
Query: 304 ttggagactagcgttctcttcacagatacctt 335
||||||||||||||||||||||| ||||||||
Sbjct: 498 ttggagactagcgttctcttcacggatacctt 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 729
Length adjustment: 9
Effective length of query: 326
Effective length of database: 720
Effective search space: 234720
Effective search space used: 234720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
