BAC Information

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BAC

Clone NameMSMg01-492G01
Chromosome4 (Build37)
Map Location 85,547,750 - 85,548,321
singlet/doubletsinglet
Overlap genenone
Upstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492G01.T7 (MSMg01no492_g01.b1)MSMg01-492G01.TJ (MSMg01no492_g01.g1)
ACCAG570148AG570149
length712798
length of high quality
(start - end)
575 (44 - 618)90 (91 - 180)
definitionCHROMAT_FILE: MSMg01no492_g01.b1 PHD_FILE: MSMg01no492_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:35 2005CHROMAT_FILE: MSMg01no492_g01.g1 PHD_FILE: MSMg01no492_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAAAATTGCTCATGGTTTTATATTTAGGGCTAAGCATGCTATATA
TAGAGAAGCTAATTTCAATGTTCTCCAAAAGCAAGCAGTACTAAAAGTAC
ATGCATGCTCCATGCTACCATGTACTTTGAGTTACGCTGTCTTGGAAACT
TTTGACAAGCCTCAGCCTAATTCTCATCCTCCAACCAATTACCAAATGCA
TACATGAATAAGAGTTTAATGATCATTTAATTAACTAAGTTCATAAAAGT
TCAAACCAAGGGTTAATTAGTAAGATGGGTCAGCAGCTTAAGCCGTTTGT
GATCAAACTTGATCACTTGAGATTGATCCCCAGGTCTCACATCGTTGAAA
GAGAAGACCAACTCTAAAGTTGTCCTTTGATGTAAACATACAAACATGAA
CACATATGCAAACATACTATACCACACGCACACATATGGAAATAAGTATA
ATAAAACAATTGTAACTTGCAACCAAGATAATTATTTCCTTAGATGAAAC
TGTAGGCATCACATCTCCTGGTTCACTGAAGAGCCTGAGGTCAGGGTCAC
TATCCCCAAGCTTATGGCATAGTAAAAAGAGCAAGCTAGTGATGAGACAA
AATGCACCTAAGTTCTAAACCCTGACTCTGGACTCTGTATGATCTTATTC
TCAATATCATCT
AATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTGCACCCTTCAATGAGAGAAAG
ATGAGGGTGTGATACCCATAGGCTTAAAACACACGGTGTGTGTGTGTGGG
GGGGGGGGCAGGGCAAAAGTATGCAGAAGCGATTAAACAGGCAGGGAGAG
CTAAGCCCCAGAGCCAGACCATTTCATACTGGTCTATGCATAATATCCTC
AGATGATGTGTGAAGGAACAGTATGGCTAATGATGATCTTATAAACACGC
AAACCAAGCGCTCTTTTTTTCTTAAAGTACCTATGATGGCTTTGCTCATC
CTGTGAAATAATATAAAAGCGCCTCTCATGAATTCCTAGAGGGTAATGGT
GCAATCGGCTAATTCTGCGTTTGTGTGGTTACGGGGTGTTCTTATTGTAC
AGAACACCCCGTTCGTTCGTCCAGGTTTTTCGCTCTGTCGGCTACTGCAC
CACTATTTTGTTAACTTTCGCGCCGTGTCTCGATTTCCGCTTTCTTTTCG
TGTCCCCTTCTTCTTTTCCATAAACCTCCCTCTTATTCTCTCCGTCTTTA
TTGATTTCTTCTATACGTTTGTATTCTTTCATTCTCCTACACGTTTTCTT
TTTTTTCCTATATTCCACTCTTTCTCTTCCCCTCCATCCCTTTCTCTCCT
TTCTTTCCCCCACTCGTCACATTTTTCTCTTCTTTTTCTTTCCACATACT
CCTTCGCTTCCATTACTTCTTTCCTTCTCCCCTCTCGCCTTATCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_g01.b1 MSMg01no492_g01.b1 CHROMAT_FILE:
MSMg01no492_g01.b1 PHD_FILE: MSMg01no492_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:35 2005
         (575 letters)



>mm_chr4_85547547_85548521
          Length = 975

 Score = 1006 bits (520), Expect = 0.0
 Identities = 559/572 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaaaaattgctcatggttttatatttagggctaagcatgctatatatagaga 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaaaaagtgttcatggttttatatttagggctaagcatgctatatatagaga 263

                                                                       
Query: 64  agctaatttcaatgttctccaaaagcaagcagtactaaaagtacatgcatgctccatgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 agctaatttcaatgttctccaaaagcaagcagtactaaaagtacatgcatgttccatgct 323

                                                                       
Query: 124 accatgtactttgagttacgctgtcttggaaacttttgacaagcctcagcctaattctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accatgtactttgagttacgctgtcttggaaacttttgacaagcctcagcctaattctca 383

                                                                       
Query: 184 tcctccaaccaattaccaaatgcatacatgaataagagtttaatgatcatttaattaact 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 tcctccaaccaattaccaaatgcatacatgaataagagtttaatgagcatttaattaact 443

                                                                       
Query: 244 aagttcataaaagttcaaaccaagggttaattagtaagatgggtcagcagcttaagccgt 303
           ||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||
Sbjct: 444 aagttcataaaagttcaaaccaagggccagctagtaagatgggtcagcagcttaagccgt 503

                                                                       
Query: 304 ttgtgatcaaacttgatcacttgagattgatccccaggtctcacatcgttgaaagagaag 363
           |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 504 ttgtgatcaaacttgaccacttgagattgatccccaggtctcacattgtggaaagagaag 563

                                                                       
Query: 364 accaactctaaagttgtcctttgatgtaaacatacaaacatgaacacatatgcaaacata 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 accaactctaaagttgtcctttgatgtaaacatacaaacatgaacacgtatgcaaacata 623

                                                                       
Query: 424 ctataccacacgcacacatatggaaataagtataataaaacaattgtaacttgcaaccaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctataccacacgcacacatatggaaataagtataataaaacaattgtaacttgcaaccaa 683

                                                                       
Query: 484 gataattatttccttagatgaaactgtaggcatcacatctcctggttcactgaagagcct 543
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gataattatttccttagatgaaaatgtaggcatcacatctcctggttcactgaagagcct 743

                                           
Query: 544 gaggtcagggtcactatccccaagcttatggc 575
           ||||||||||||||||||||||||||||||||
Sbjct: 744 gaggtcagggtcactatccccaagcttatggc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)