Query= MSMg01no492_i20.b1 MSMg01no492_i20.b1 CHROMAT_FILE:
MSMg01no492_i20.b1 PHD_FILE: MSMg01no492_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:49 2005
(684 letters)
>mm_chr4_53496233_53497317
Length = 1085
Score = 1038 bits (537), Expect = 0.0
Identities = 555/561 (98%), Gaps = 3/561 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttaacatta-tcgaagaacattgttcagaaaattaaaagaataaaaatgaat 63
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcttttaacattagt-gaagaacattgttcagaaaattaaaagaataaaaatgaat 502
Query: 64 tcagattacgtttcccatctgaaatcctgaaaaatctaaaatgcatcaagatctggaact 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagattacatttcccatctgaaatcctgaaaaatctaaaatgcatcaagatctggaact 442
Query: 124 ttctgagcaccaacatgggacacatgt-gaaaattccatgtgtgacctcctctgatgagc 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgagcaccaacatgggacacatgtggaaaattccatgtgtgacctcctctgatgagc 382
Query: 183 tgcaaccaaaactacataaaattacctgcagggtgtggctatgaggtatatacgaaacat 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tgcaaccaaaactacataaaattacctgcagggtgtggctatcaggtatatacgaaacat 322
Query: 243 gaagggattctacgtttagacttgggttctgtccccgagatactttacacattatatgct 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gaagggattctacgtttagacttgggttctgtccccgagatactctacacattatatgct 262
Query: 303 ccaatattttgatgttaaaattttgtccttctttgtacatgctgcatgcatgcacatgag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatattttgatgttaaaattttgtccttctttgtacatgctgcatgcatgcacatgag 202
Query: 363 gtcacaggacagcttgagagaactggttctctttccaccctgtgagtcctgcagactata 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcacaggacagcttgagagaactggttctctttccaccctgtgagtcctgcagactata 142
Query: 423 ctcattcaccaggcttggcagagggctcctttgcccactgagccttctcaatcgttatcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ctcattcaccaggcttggcagagggctcctttgcccactgagccttctcaatcgttatcc 82
Query: 483 aaatgtttggaatatggtttgctatggaatgaatttcaagtggggtgaatgaaaaaccat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aaatgtttggaatatggtttgctatggaatgaatttcaagtggggtgaatgaaaaaccat 22
Query: 543 ataaaacaaaacccagaacca 563
|||||||||||||||||||||
Sbjct: 21 ataaaacaaaacccagaacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space: 724550
Effective search space used: 724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_i20.g1 MSMg01no492_i20.g1 CHROMAT_FILE:
MSMg01no492_i20.g1 PHD_FILE: MSMg01no492_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:49 2005
(563 letters)
>mm_chr4_53410230_53411192
Length = 963
Score = 1011 bits (523), Expect = 0.0
Identities = 553/563 (98%)
Strand = Plus / Plus
Query: 1 acctttcagggttccacaatcccacaatcctctaaaatgctgccaccatcttcagaccta 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctctcagggttccacaatcccacaatcctctaaaatgctgccaccatcttcagaccta 260
Query: 61 taaagacattcaaaccacaatactggcagagacacagccctacttaagggaggctggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagacattcaaaccacaatactggcagagacacagccctacttaagggaggctggagt 320
Query: 121 cctcagcagtcaagtgtcaagtgctgtgatgtcttctgtcaccctgtacctcagaaatag 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcagcagtcaagtgtcaagtgccgtgatgtcttctgtcaccctgtacctcagaaatag 380
Query: 181 gctcaatcaccacatgcttattaaacatacatactaagccagaaagtccagggttccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcaatcaccacatgcttattaaacatacatactaagccagaaagtccagggttccctt 440
Query: 241 aagtcttacttctaaaacttcccctgatgacttggcttttgtccttaagaagcaaactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcttacttctaaaacttcccctgatgacttggcttttgtccttaagaagcaaactgg 500
Query: 301 ctgggattttctcacccaaagaactggcattaggccacaccccagatggcagttctgact 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ctgggattttctcacccaaagaactggcattaggccacaccccagatggcagttctaact 560
Query: 361 gccaatgtggctttcccctctcagacatatattctaaaacatgaaaggggggattaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaatgtggctttcccctctcagacatatattctaaaacatgaaaggggggattaaaaa 620
Query: 421 caaagacatccaaactgatagctactttaaagcagagctggggttgcggttgtggcttag 480
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 621 caaagacatccaaactgatagctactttaaagcagagctggggttacggttgtggcctag 680
Query: 481 ttgggagagtgcttgctagcatgcaggagggtctcatttcctccctgggctaacactggc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgggagagtgcttgctagcatgcaggagggtctcatttcctccctgggctaacactggc 740
Query: 541 tgtattagtccatgactataatc 563
||||||||||| ||| |||||
Sbjct: 741 catattagtccataactgtaatc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
