BAC Information

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BAC

Clone NameMSMg01-492O23
Chromosome4 (Build37)
Map Location 134,452,677 - 134,617,541
singlet/doubletdoublet
Overlap geneTmem50a, D4Wsu53e, Syf2
Upstream gene4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd
Downstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492O23.T7 (MSMg01no492_o23.b1)MSMg01-492O23.TJ (MSMg01no492_o23.g1)
ACCAG570573AG570574
length729802
length of high quality
(start - end)		604 (69 - 672)175 (74 - 248)
definitionCHROMAT_FILE: MSMg01no492_o23.b1 PHD_FILE: MSMg01no492_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:18 2005CHROMAT_FILE: MSMg01no492_o23.g1 PHD_FILE: MSMg01no492_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,452,677 - 134,453,247)(134,617,367 - 134,617,541)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGNAAATACGCGGA
ATTCAAGCAAATTCAAAACAAATTCTCACCTGAGTCAGACTGTGGAGCCC
TAGAAATTGACACCTAAGTTACCGTCAAGTCTGTATACCCTGTCCTCTTT
CCACTCCTGGCACGTGTGGAGTGTTTACCAGGATCGTGTGCCACAGCAGG
TCACCTGTTCTTGCTCCCGATGTCCACAGGAGGGATGGGAGGCTGGCGGT
AGCCTGGGCTTCTCTAGCATGTTCTTACATTCTCTGGGAGGCTCTCAGGC
ATCACTCACACTGAAATGTTTGCCCTTTCTCTTTTACCTTTGCTTGCATT
TGTTTTCGTTCGGTATCTTCTGGACTGGCGATCTCTACATAGCCTCCTCT
GCTGGCTTCAGGAAGTTTGCTCCTCCTCAGGGAGGGACATCTCCATCAGC
TGAGGAGCCGGGCACTGGTCAGTCAAGTGAGTCTGGTGCATCTTGGGTCC
TCAGTTCTCCTGGAAATCTCCAACAAATGAATGATCTCCATAGAAACCCT
TCAGTTCCACAGTATTACATTTTTAAATATGTAAGCAAAAAGGTCACTGA
CTGAACCCAGGGTCACTGACTGACTGCGCCCAGGGTCACGGACTATGCCC
AGGTTCACTGTCTGTGTCCAGTGTAACAGACTGACTGTGTCCAGGGTCAC
GGACTGACTTGCTCCAGTGTCACAGACTG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCCTTCCTTCTTTCCTCATTTCCTC
CTCCCTCCCCCCTCCTTCCTCCCATCATGCAGTGTCAACTGCTGATAAGG
AGGATTCTAGAGGTCTGCAAATCTCTAGAGAGGAGAAGGAGTCACATGAC
CCATAGTCCAGAACCCCAAAGTCATCTGCATGACCATCCTTGTGGGAAAC
AGGATTGGGTAGCAGGGGCCCTTTGTGTCACCTGACTCTGTCAGGTTGAG
AAGAAGGCTTTTCTGGGAACTAAACTCCCCCTTAAGCTAAAAATTGAGGG
CTGAGAGAAACCTCCCGGGTTCCCGGGATCAAAAAAAAAATTTGGAAAAG
TGGTTTGTAAACCCCCAAATAAAAAACCCTTTGGTGGGGGCTNNNNNNNC
TNCTNNNNNNNTCGNNNNNNNNNNNNNNNNNNNNNCGNNNNNNNNNNNNN
NNNNNNNNNCANNNNNNNNNNNNNNNNNNNNNNNTTTNNNNTGNNNNNNN
NGGGGGCTGGGGGGNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNTNNNNNTNNNNNTTTTTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_o23.b1 MSMg01no492_o23.b1 CHROMAT_FILE:
MSMg01no492_o23.b1 PHD_FILE: MSMg01no492_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:18 2005
         (604 letters)



>mm_chr4_134452477_134453480
          Length = 1004

 Score = 1096 bits (567), Expect = 0.0
 Identities = 570/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattctcacctgagtcagactgtggagccctagaaattgacacctaagttaccgtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattctcacctgagtcagactgtggagccctagaaattgacacctaagttaccgtcaa 260

                                                                       
Query: 61  gtctgtataccctgtcctctttccactcctggcacgtgtggagtgtttaccaggatcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgtataccctgtcctctttccactcctggcacgtgtggagtgtttaccaggatcgtg 320

                                                                       
Query: 121 tgccacagcaggtcacctgttcttgctcccgatgtccacaggagggatgggaggctggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccacagcaggtcacctgttcttgctcccgatgtccacaggagggatgggaggctggcg 380

                                                                       
Query: 181 gtagcctgggcttctctagcatgttcttacattctctgggaggctctcaggcatcactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagcctgggcttctctagcatgttcttacattctctgggaggctctcaggcatcactca 440

                                                                       
Query: 241 cactgaaatgtttgccctttctcttttacctttgcttgcatttgttttcgttcggtatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgaaatgtttgccctttctcttttacctttgcttgcatttgttttcgttcggtatct 500

                                                                       
Query: 301 tctggactggcgatctctacatagcctcctctgctggcttcaggaagtttgctcctcctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctggactggcgatctctacatagcctcctctgctggcttcaggaagtttgctcctcctc 560

                                                                       
Query: 361 agggagggacatctccatcagctgaggagccgggcactggtcagtcaagtgagtctggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggagggacatctccatcagctgaggagccgggcactggtcagtcaagtgagtctggtg 620

                                                                       
Query: 421 catcttgggtcctcagttctcctggaaatctccaacaaatgaatgatctccatagaaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcttgggtcctcagttctcctggaaatctccaacaaatgaatgatctccatagaaacc 680

                                                                       
Query: 481 cttcagttccacagtattacatttttaaatatgtaagcaaaaaggtcactgactgaaccc 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcagttccacagtattacgtttttaaatatgtaagcaaaaaggtcactgactgaaccc 740

                                          
Query: 541 agggtcactgactgactgcgcccagggtcac 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 agggtcactgactgactgcgcccagggtcac 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no492_o23.g1 MSMg01no492_o23.g1 CHROMAT_FILE:
MSMg01no492_o23.g1 PHD_FILE: MSMg01no492_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:18 2005
         (175 letters)



>mm_chr4_134617114_134617688
          Length = 575

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccttccttctttcctcatttcctcctccctcccccctccttcctcccatcatgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tctccttccttctttcctcatttcctcctccctcccccctccttcctcccatcatgcagt 369

                                                                       
Query: 61  gtcaactgctgataaggaggattctagaggtctgcaaatctctagagaggagaaggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtcaactgctgataaggaggattctagaggtctgcaaatctctagagaggagaaggagtc 309

                                                                  
Query: 121 acatgacccatagtccagaaccccaaagtcatctgcatgaccatccttgtgggaa 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acatgacccatagtccagaaccccaaagtcatctgcatgaccatccttgtgggaa 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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