NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAAAATTCTTTCAAACAGTACCAGCCCAATAATCACAATCA
AGAGATGTAAATCTATGACCAGATGAACAGTCATATGGTAAAGCCAAATT
TTGAGATAGGTATAAAACAGTATCAGTAGACACAGAAATAGACACAGGAC
ACCTATCTTGGGCTTTTATTGACCTTAGACAGTTTGTTTCAGGTCAAGGA
AGTACTTCTTTCTGAGTCTCTTCTATCTCCTTTATCAAATAGAAAGTTAA
GGTTTGTAACCCTACTAGTGACTCCCCAACTTAGCATCCTAAATCTACTT
CTGTGCCATCAGATTTTCTATGGACATCATGACAGCAATGACAAAATTTT
GTAAAAAACATTTGGAGCCCCCAGAACTTAGAGCTTCAGGTATTAGCTTA
CTAATCATCATACCAGCTCTATGGGATAAATGCAATGAATATTGTCACTC
CCTATGTCTATACCTTGGAGAGGAAGAAGTTTCTATAGTTGCTGAAAGTC
ACACAGCTTCTACCAGTGAATCTAGGATTCAGACTCAGTTTTGGCAGTTT
CTTAGTACACAATAAAAAAATTTTTATTGGCCATTTCATGGAAAAGAAAG
GTTGGCCTGCATGTATGCAGGGGCAAATGGGGCATGCCTGTTAACTTTTG
GATTCCCAAAAAANAAATTGGTTTTN

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAAA
AGCAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGC
TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
CCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACA
ACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATAT
CACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCC
ACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATA
TAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAAC
AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTNCATAGTCACAAAT
AATAAAAATATCTTGGCGTGACTCTTACTAAGGAAGTGAAAGATCTGTAT
GATAAAAACTTCAAGTCTCTGAAGAAAGAAATTTAAAGAGAATCCCGAAG
GATGGGAAGATCCCCCCAGGCCAGGGAATGGCAGGGAACAAATTGGAAAA
AGGGCTTTCTTGGCCAAAGGAACCTAAAAATTCATGGGGACCCCCATAAA
ATCTCCCCCCAATTTTTTCACGAAATTAAAAGG

Query= MSMg01no493_c19.b1 MSMg01no493_c19.b1 CHROMAT_FILE:
MSMg01no493_c19.b1 PHD_FILE: MSMg01no493_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:36 2005
         (468 letters)



>mm_chr4_66012694_66013562
          Length = 869

 Score =  855 bits (442), Expect = 0.0
 Identities = 460/466 (98%), Gaps = 1/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaaaattctttcaaacagtaccagcccaataatcacaatcaagagatgtaa 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggaattctttaaaaccctttcaaacagtaccagcccaataatcacaatcaagagatgtaa 610

                                                                       
Query: 64  atctatgaccagatgaacagtcatatggtaaagccaaattttgagataggtataaaacag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atctatgaccagatgaacagtcatatggtaaagccaaattttgagataggtataaaacag 550

                                                                       
Query: 124 tatcagtagacacagaaatagacacaggacacctatcttgggcttttattgaccttagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tatcagtagacacagaaatagacacaggacacctatcttgggcttttattgaccttagac 490

                                                                       
Query: 184 agtttgtttcaggtcaaggaagtacttctttctgagtctcttctatctcctttatcaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 489 agtttgtttcaggtcaaggaagtacttctttctgagtctcttctatcccctttatcaaat 430

                                                                       
Query: 244 agaaagttaaggtttgtaaccctactagtgactccccaacttagcatcctaaatctactt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaaagttaaggtttgtaaccctactagtgactccccaacttagcatcctaaatctactt 370

                                                                       
Query: 304 ctgtgccatcagattttctatggacatcatgacagcaatgacaaaattttgt-aaaaaac 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 ctgtgccatcagattttctatggacatcatgacagcaatgacaaaattttgtaaaaaaac 310

                                                                       
Query: 363 atttggagcccccagaacttagagcttcaggtattagcttactaatcatcataccagctc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atttggagcccccagaacttagagcttcaggtattagcttactaatcatcataccagctc 250

                                                         
Query: 423 tatgggataaatgcaatgaatattgtcactccctatgtctatacct 468
           ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 249 tatgggataaatgcaatgaatattgtcactccctatgcctacacct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space:   393422
Effective search space used:   393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)