Query= MSMg01no493_e02.b1 MSMg01no493_e02.b1 CHROMAT_FILE:
MSMg01no493_e02.b1 PHD_FILE: MSMg01no493_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:43 2005
(695 letters)
>mm_chr4_24625440_24626534
Length = 1095
Score = 1255 bits (649), Expect = 0.0
Identities = 681/693 (98%), Gaps = 4/693 (0%)
Strand = Plus / Minus
Query: 5 gaattctataaatttgggatgctgaccgtggatttgtgttgtgttccctgaaatgaccca 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattctataaatcagggatgctgaccgtggatttgtgttgtgttccctgaaatgaccca 836
Query: 65 ttaggatgccaaggttgccatcttttgaagggagaaacttctgtaggattcgtgcctctc 124
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 835 ttaggatgccaaggttgccgtctattgaagggagaaacttctgtaggattcgtgcctctc 776
Query: 125 gccaaggtgataaactctcttttccaattaatagtagtgtcctttgtttcaccaggtatc 184
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 775 gccaaggtgataaactctcttgtccaattaatagtagtgtcttttgtttcaccaggtatc 716
Query: 185 acagcttttataatgacatgcaactaaagtgtagtaataaa--atgagcatcctgtaagc 242
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct: 715 acagcttttataatgacatgcaactaaagtgtagtaataaaacat--gcatcctgtaggc 658
Query: 243 tcttccaataaaaccaccaaagcagtgacagaaacaggctgccagtatctgctcgtaggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcttccaataaaaccaccaaagcagtgacagaaacaggctgccagtatctgctcgtaggc 598
Query: 303 agcaggtggcagtgtgaatccaccaaaattcagtagttcgtttaaagcaaaaaccagggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agcaggtggcagtgtgaatccaccaaaattcagtagttcgtttaaagcaaaaaccagggg 538
Query: 363 gaaaatggaaagaaaaattatttattttgctacatattagtcttctgacccaatcagtaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaaaatggaaagaaaaattatttattttgctacatattagtcttctgacccaatcagtaa 478
Query: 423 aaaagtcattattcacaccacactgggcaatatgcattgtaatttttaacaaataatagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaaagtcattattcacaccacactgggcaatatgcattgtaatttttaacaaataatagg 418
Query: 483 aaactgttaatgtgctcacaggaaatgcagttttgtctcgggcttctatggtcatttatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaactgttaatgtgctcacaggaaatgcagttttgtctcgggcttctatggtcatttatc 358
Query: 543 accgcactttgtgaaatcactcatttgttctaatttgaatgtaaatgactctaaggtttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 accgcactttgtgaaatcactcatttgttctaatttgaatgtaaatgactctaaggtttt 298
Query: 603 acaaataaggtgacagactcacataaatgtaattgcagggttcatctccttctttttata 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acaaataaggtgacagactcacataaatgtaattgcagggttcatctccttctttttata 238
Query: 663 tatcactcattaagttatgaattaaatacatcg 695
|||||||||||| ||||||||||||||||||||
Sbjct: 237 tatcactcattaggttatgaattaaatacatcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_e02.g1 MSMg01no493_e02.g1 CHROMAT_FILE:
MSMg01no493_e02.g1 PHD_FILE: MSMg01no493_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:43 2005
(598 letters)
>mm_chr4_24432169_24433170
Length = 1002
Score = 1069 bits (553), Expect = 0.0
Identities = 592/615 (96%), Gaps = 18/615 (2%)
Strand = Plus / Plus
Query: 1 tctagtcaaagacgaatttttcctgaaattttgagtagttacttggttctttatctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tctagtcaaagacgaatttttcctgaaattttgagtagttacttggttctttatctgtgt 248
Query: 61 gcatggagttctgtgatgtgtaaaatacctagtgaaatatgagttttaattcacacttta 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 gcatggagttctgtgatgtgtaaaatacctagtgaaataagagttttaattcacacttta 308
Query: 121 taatgtcatttacagctcttccctccatcatggcatttattacatctctatttagatacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatgtcatttacagctcttccctccatcatggcatttattacatctctatttagatacc 368
Query: 181 cactggctggtgttggaaatactgcatattctgggagaaaaattgagtgagtttatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cactggctggtgttggaaatactgcatattctgggagaaaaattgagtgagtttatgaat 428
Query: 241 ttctgtcttaattctttttaagaatcctaaggattgatcctaaggattggttgattcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttctgtcttaattctttttaagaatcctaaggattgatcctaaggattggttgattcttt 488
Query: 301 ttaaaaatcttaagattgaactcttagttggttgattgattgattgactcataattctat 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 489 ttaaaaatcttaagattgaactcttagttggt-gattgattgattgactcataattctat 547
Query: 361 aattgaatttatcagttgattatgctggcatatggtggtttataatcccagctcatagga 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aattgaatttatcagttgagtatgctggcatatggtggtttataatcccagctcatagga 607
Query: 421 agctcagataggaggatcatgcggccaccctggattatatgctgaattctgggtcagcct 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agctcagataggaggatcatgaggccaccctggattatatgctgaattctgggtcagcct 667
Query: 481 gaactatgt-------------tcaaaagaaaataaacaattctattgcattataagtat 527
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaactatgtagtaagaccctgttcaaaagaaaataaacaattctattgcattataagtat 727
Query: 528 ttagtgatgttaaaaaaaagta----agaagtgtttgtttatgcctctctttcacccaag 583
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 728 ttagtgatgtttaaaaaaagtaggtaagaagtgtttgtttatgcctctctttcacccaag 787
Query: 584 gtatccatgtatcat 598
|| ||||||||||||
Sbjct: 788 gtgtccatgtatcat 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1002
Length adjustment: 10
Effective length of query: 588
Effective length of database: 992
Effective search space: 583296
Effective search space used: 583296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
