BAC Information

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BAC

Clone NameMSMg01-493G18
Chromosome4 (Build37)
Map Location 136,966,276 - 137,074,050
singlet/doubletdoublet
Overlap geneEla3, 1700013G24Rik, Hspg2
Upstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711
Downstream geneLdlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493G18.T7 (MSMg01no493_g18.b1)MSMg01-493G18.TJ (MSMg01no493_g18.g1)
ACCAG570945AG570946
length753764
length of high quality
(start - end)		651 (62 - 712)634 (73 - 706)
definitionCHROMAT_FILE: MSMg01no493_g18.b1 PHD_FILE: MSMg01no493_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:57 2005CHROMAT_FILE: MSMg01no493_g18.g1 PHD_FILE: MSMg01no493_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,966,276 - 136,966,926)(137,073,417 - 137,074,050)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TAACCTATTTACCAGGCTGGCCCTGACTCAGAAATCCACCTGCCTCTGCC
TCCCAAGTGCCAAAAATTTTAAGACGCTGTCCCTAGCCAGTGAGGGTGGG
TGCCATTCAGAAACAAAATGTGGGTGATCGGGAGGGGACCCCTCCCTTTC
CATTTGCCTTGGGAGGCAGAGGCAGAGTGACATATTGACTCTGGGGACAA
TATGCAAGTGAGTACTGAAACCAGTACGGGTGGAGAGGAGACACTCAGCT
CAGTCGAGGCTTGCTCAAGAAAAAAGGGAGGGGAGCTGGAGAGATGGCTC
AGTGGTTAAGAGCACTGACTGTTCTTCTGAAGGTCCTGAGTTCAAATCCC
AGCAACCACATGGTGGCTCACAACCATCAGTAATGAGATCAGGCACCCTC
TTCTGGAGTGTCTGAAGACAGCCACAGTGTACTTACATATAATAAATAAA
TAAATGAATCTAAAAAAAAAAAAGAGGGGCAGAGGTCTGGAGTCATCGAG
GAGCTGGGTGAGGTGGCATGGTCTTTAATCCTGCTCTGAGGCTGAGGCAG
GAGGATTATGAGTTGGTGGTCAACTAGGGCTGCACAGCGAGGCCCTGAAT
CAAAGCAAAAAAATAAAATGGGTCTGGAAGCCCAACACAGCACCTCCAAG
TAAGGCTTTGGTTTTGCCCTTGTCAAGGAGGGGGAGGAGGANGAGAGGGA
TAC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCGCCACTACAGCTGAAGATGGGGAAA
GTCACGCATCACGCTGGTGCCTTTCAAGTGAGCGAGTGAGGCTCAGAGAT
AAGAAAGGACACGCAGGGTCAACCGGACGCTCATCTCCTGACTTATAAGA
TCAGGACTGCCTGACTGCAAAACCTGCCCAGTTAATTTTCTCCACTGACG
TCTGATTCTCCCACTATTGATGAAACGTCAACACGAGACCTGACAGAGTA
CTGCAGTTGAGGGCCGGAACGCTTGCAGCAGTTGCTGCAAGCAAGCCAGG
AAATTGAACTCAGGGTGGCTGACTTCTTAATCAGTGTTCCTGCCCACAGC
CAGGACTCCCCTCACAGTACAGAAGACCAGCCAGGACTATGGCCTCAGGC
AAGGCAGTGCCCACTGGCCAAGGTACTTGAGAGGCTGGGATCTCTTTCCT
CCCCGGGGCCACCGTAAGGCTGGCCCGAGTCTTGGAAGGAGTAGACAGTA
CACGTACCTTACAGCGGCAAGTCTCCCCTGAGGTGCCCAGGCTCCCTCGC
TCATCACAGCGCACAATTTCCTGGGCTGGAGGCAGGAGGAAAGCATTGGC
AGGGTGGGTGGGAATGGGCAGCTCGCCAGGGATCTCCGGGTGTGGGCTGG
GAAGTTGGGNTGGGGGGGTTGGNNNNNNANNNNNNNNNNNTNNNNNNNNN
NNNNNNTNTNTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_g18.b1 MSMg01no493_g18.b1 CHROMAT_FILE:
MSMg01no493_g18.b1 PHD_FILE: MSMg01no493_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:57 2005
         (651 letters)



>mm_chr4_136966076_136967126
          Length = 1051

 Score = 1259 bits (651), Expect = 0.0
 Identities = 651/651 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggctggccctgactcagaaatccacctgcctctgcctcccaagtgccaaaaatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggctggccctgactcagaaatccacctgcctctgcctcccaagtgccaaaaatttta 260

                                                                       
Query: 61  agacgctgtccctagccagtgagggtgggtgccattcagaaacaaaatgtgggtgatcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacgctgtccctagccagtgagggtgggtgccattcagaaacaaaatgtgggtgatcgg 320

                                                                       
Query: 121 gaggggacccctccctttccatttgccttgggaggcagaggcagagtgacatattgactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggggacccctccctttccatttgccttgggaggcagaggcagagtgacatattgactc 380

                                                                       
Query: 181 tggggacaatatgcaagtgagtactgaaaccagtacgggtggagaggagacactcagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggggacaatatgcaagtgagtactgaaaccagtacgggtggagaggagacactcagctc 440

                                                                       
Query: 241 agtcgaggcttgctcaagaaaaaagggaggggagctggagagatggctcagtggttaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcgaggcttgctcaagaaaaaagggaggggagctggagagatggctcagtggttaaga 500

                                                                       
Query: 301 gcactgactgttcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcactgactgttcttctgaaggtcctgagttcaaatcccagcaaccacatggtggctcac 560

                                                                       
Query: 361 aaccatcagtaatgagatcaggcaccctcttctggagtgtctgaagacagccacagtgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccatcagtaatgagatcaggcaccctcttctggagtgtctgaagacagccacagtgta 620

                                                                       
Query: 421 cttacatataataaataaataaatgaatctaaaaaaaaaaaagaggggcagaggtctgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttacatataataaataaataaatgaatctaaaaaaaaaaaagaggggcagaggtctgga 680

                                                                       
Query: 481 gtcatcgaggagctgggtgaggtggcatggtctttaatcctgctctgaggctgaggcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcatcgaggagctgggtgaggtggcatggtctttaatcctgctctgaggctgaggcagg 740

                                                                       
Query: 541 aggattatgagttggtggtcaactagggctgcacagcgaggccctgaatcaaagcaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggattatgagttggtggtcaactagggctgcacagcgaggccctgaatcaaagcaaaaa 800

                                                              
Query: 601 aataaaatgggtctggaagcccaacacagcacctccaagtaaggctttggt 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aataaaatgggtctggaagcccaacacagcacctccaagtaaggctttggt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_g18.g1 MSMg01no493_g18.g1 CHROMAT_FILE:
MSMg01no493_g18.g1 PHD_FILE: MSMg01no493_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:57 2005
         (634 letters)



>mm_chr4_137073217_137074250
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgccactacagctgaagatggggaaagtcacgcatcacgctggtgcctttcaagtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 accgccactacagctgaagatggggaaagtcacgcatcacgctggtgcctttcaagtgag 775

                                                                       
Query: 61  cgagtgaggctcagagataagaaaggacacgcagggtcaaccggacgctcatctcctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cgagtgaggctcagagataagaaaggacacgcagggtcaaccggacgctcatctcctgac 715

                                                                       
Query: 121 ttataagatcaggactgcctgactgcaaaacctgcccagttaattttctccactgacgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttataagatcaggactgcctgactgcaaaacctgcccagttaattttctccactgacgtc 655

                                                                       
Query: 181 tgattctcccactattgatgaaacgtcaacacgagacctgacagagtactgcagttgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgattctcccactattgatgaaacgtcaacacgagacctgacagagtactgcagttgagg 595

                                                                       
Query: 241 gccggaacgcttgcagcagttgctgcaagcaagccaggaaattgaactcagggtggctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gccggaacgcttgcagcagttgctgcaagcaagccaggaaattgaactcagggtggctga 535

                                                                       
Query: 301 cttcttaatcagtgttcctgcccacagccaggactcccctcacagtacagaagaccagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttcttaatcagtgttcctgcccacagccaggactcccctcacagtacagaagaccagcc 475

                                                                       
Query: 361 aggactatggcctcaggcaaggcagtgcccactggccaaggtacttgagaggctgggatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aggactatggcctcaggcaaggcagtgcccactggccaaggtacttgagaggctgggatc 415

                                                                       
Query: 421 tctttcctccccggggccaccgtaaggctggcccgagtcttggaaggagtagacagtaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tctttcctccccggggccaccgtaaggctggcccgagtcttggaaggagtagacagtaca 355

                                                                       
Query: 481 cgtaccttacagcggcaagtctcccctgaggtgcccaggctccctcgctcatcacagcgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cgtaccttacagcggcaagtctcccctgaggtgcccaggctccctcgctcatcacagcgc 295

                                                                       
Query: 541 acaatttcctgggctggaggcaggaggaaagcattggcagggtgggtgggaatgggcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acaatttcctgggctggaggcaggaggaaagcattggcagggtgggtgggaatgggcagc 235

                                             
Query: 601 tcgccagggatctccgggtgtgggctgggaagtt 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tcgccagggatctccgggtgtgggctgggaagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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