Query= MSMg01no493_j19.b1 MSMg01no493_j19.b1 CHROMAT_FILE:
MSMg01no493_j19.b1 PHD_FILE: MSMg01no493_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:13 2005
(682 letters)
>mm_chr4_108534492_108535574
Length = 1083
Score = 1067 bits (552), Expect = 0.0
Identities = 579/588 (98%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 96 cacttgctgctcttccagagaatgagttcagttcccagcacccacgtccagaggccacag 155
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1049 cacttgctgctcttccagagaatgagctcagttcccagcacccacgtccagaggccacag 990
Query: 156 ctgcctgggactctaggctcctggagatctgatgatctcttctgactccctaagcacctg 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ctgcctgggactctaggctcctggagatctgatgatctcttctgactccctaagcacctg 930
Query: 216 cacacacacagcatacacacgcacagatgcacacacatacacaaaagccacaagtatcct 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cacacacacagcatacacacgcacagatgcacacacatacacaaaagccacaagtatcct 870
Query: 276 gtagaataaaggttacaatagttcctttctcagggctgttaggagactaaggacaaacca 335
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 869 gtagaataaaggttacaatagttcctttctcagggctgttaggagactagggacaaacca 810
Query: 336 aatgggatgacaccttgtaagcaattaggagatgcctggccacctgaaggcccaaagttt 395
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 809 aatgggatgacaccttgtaagcaattaggagatgcctggccgcctgaaggcccaaagttt 750
Query: 396 ttttatgggagtaacaatcttgaaagtcatagaaaaagttttaagcaggggaattacatg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttttatgggagtaacaatcttgaaagtcatagaaaaagttttaagcaggggaattacatg 690
Query: 456 gattagtgttctg-aaaaaaatcactctggggaaggcaaggaagatgggctacagaaggg 514
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gattagtgttctgaaaaaaaatcactctggggaaggcaaggaagatgggctacagaaggg 630
Query: 515 tatcacaggcgagtaggcaagtaacaggaaataatgggactgtcacaacaaatacgccca 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tatcacaggcgagtaggcaagtaacaggaaataatgggactgtcacaacaaatacgccca 570
Query: 575 ggaaagagaaaaagcctgtgctatgctaaaagtgccagcaaggcagaggaaaggcaggct 634
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 569 ggaaagagaaaaggcctgtgctatgctaaaagtgccagcaaggcagtggaaaggcaagct 510
Query: 635 ttaaaagtgcagaggtggctctcacctgtgttctaagagctcaggagg 682
||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 509 ttaaatgtgcagaggtggctctcacctgtgttccaagagctcaggagg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_j19.g1 MSMg01no493_j19.g1 CHROMAT_FILE:
MSMg01no493_j19.g1 PHD_FILE: MSMg01no493_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:13 2005
(645 letters)
>mm_chr4_108516919_108517962
Length = 1044
Score = 949 bits (491), Expect = 0.0
Identities = 592/645 (91%), Gaps = 33/645 (5%)
Strand = Plus / Plus
Query: 1 tccttggagtaagggaaaggacatgctaatgtctgaagattctgtctgggaagtgtggta 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 215 tccttggagtaagggaaaggacacgctaatgtctgaagattctgtctgggaagtgtggtg 274
Query: 61 ttgggactagaacggagtggtttgaggggaggcccctatcagaagaaatgccctccggga 120
|||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct: 275 ttgggactagaa----------t----ggaggcccctatcagaagaaatgccctccagga 320
Query: 121 ttattcatacctgagtgtgagagtggggaacaaggcagaggtggagcctgcaggggaggg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 321 ttattcatacccgagtgtgagagtggggaacaaggcagaggtggagcctgcagcggagag 380
Query: 181 gacctcacagcaccagcacctaggggcagaagcactcctgtgtcttagaaaaatgctaga 240
||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct: 381 gacagcacagca-cagcaccgaggggcagaagcactcctgtgtcttacaaaaatgctgga 439
Query: 241 atgggattgcagaagtgggcagagtgtttttgtttgtttattgtttgtttatttgtttgt 300
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 440 atgggattgcagaagtgggcagagtgtttttgtttgtttgctgtctgtttatttgtttgt 499
Query: 301 gtttttaagacaagttctcccttgtagccctagctgtcctgttactctgtgtagaccagg 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 gtttttaagacaagttctcccttgtagccctagctgtcccgttactctgtgtagaccaga 559
Query: 361 ctggccttggtatgctaggactaagggtatttgtcaccacatccagccatgtgtaatttc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggctttggtatgctaggactaagggtatttgtcaccacatccagccatgtgtaatttc 619
Query: 421 ctcattgaagcctttgtaagggctccttgtaagggttgaccttttatccttgggtccctg 480
|||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 620 ctcattgaagcctttgtaagggctccatgtaagggtagacc------------------g 661
Query: 481 gatagcctctgaaatgtttcttattgagcagtgatataattgaaagagatcatgccaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gatagcctctgaaatgtttcttattgagcagtgatataattgaaagagatcatgccaggc 721
Query: 541 cacgccgctgtgtcaatgagaaaaggagcttgccacagatctcgccgaccagagcttaac 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 722 cacgccgctgtgtcaatgagaaaaggagcttgccacagatctcgccgaccagagctcaac 781
Query: 601 tctgggctcacacagtggaaagagagggctggctcttttttggtg 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tctgggctcacacagtggaaagagagggctggctcttttttggtg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
